MmuEX6056519 @ mm10
Exon Skipping
Gene
ENSMUSG00000044636 | Csrnp2
Description
cysteine-serine-rich nuclear protein 2 [Source:MGI Symbol;Acc:MGI:2386852]
Coordinates
chr15:100484450-100489666:-
Coord C1 exon
chr15:100489435-100489666
Coord A exon
chr15:100487945-100488204
Coord C2 exon
chr15:100484450-100484746
Length
260 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTGCTCTGTTCATAGCAA
3' ss Score
8.42
5' ss Seq
AAGGTGCCT
5' ss Score
5.39
Exon sequences
Seq C1 exon
AGTCCTCATGTTCCTGGCTAGCTGGTGGTGAGCAGCTTGGGGCCATCGTGCTTGGCTCCCCGCGGACAACTTTGGAAGCCAATGGATGCGTTCTCCGGCTCAGGCCTCAAGAGGAAATTCGATGATGTGGACGTGGGCTCGTCAGTCTCCAACTCAGATGATGAGATGTCCAGCAGTGATAGTGCGGACAGCTGCGACAGCCTTAACCCTCCTACGACTGCCAGCTTCACAC
Seq A exon
CAACATCCATCCTGAAGAGGCAGAAGCAGCTACGGAGGAAGAATGTCCGCTTTGACCAGGTGACTGTGTACTACTTCGCCCGGCGACAGGGCTTCACCAGCGTGCCCAGCCAGGGTGGGAGCTCCTTGGGAATGGCCCAACGCCATAACTCTGTACGCAGCTACACCCTCTGTGAGTTTGCGCAAGAGCAGGAGGTGAACCATAGAGAGATTCTCCGTGAGCACCTGAAGGAGGAGAAACTTCACGCCAAGAAAATGAAG
Seq C2 exon
CTGACGAAGAACGGGACCGTGGAGTCAGTGGAGGCCGACGGCTTGACACTCGATGATGTCTCGGACGAGGACATCGACGTGGAGAATGTGGAGGTGGACGACTACTTCTTCCTTCAGCCCCTGCCCACCAAACGGCGGCGGGCCCTGCTCAGGGCTTCCGGGGTCCACCGGATTGACGCCGAAGAGAAGCAAGAACTCAGAGCCATCCGCCTGTCTCGGGAAGAGTGTGGTTGTGACTGTCGGCTGTACTGTGACCCAGAGGCATGCGCCTGTAGCCAGGCTGGGATTAAATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044636-'7-6,'7-5,10-6=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.686 A=0.264 C2=0.010
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGTGATAGTGCGGACAG
R:
AACCACACTCTTCCCGAGACA
Band lengths:
294-554
Functional annotations
There are 1 annotated functions for this event
PMID: 19389623
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: coimmunoprecipitation, far western blotting, mutation analysis, pull down. ELM ID: ELMI002633; ELM sequence: TSILKR; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types