DreEX6081756 @ danRer10
Exon Skipping
Gene
ENSDARG00000075972 | csrnp2
Description
cysteine-serine-rich nuclear protein 2 [Source:ZFIN;Acc:ZDB-GENE-090312-137]
Coordinates
chr23:33709264-33714441:-
Coord C1 exon
chr23:33714272-33714441
Coord A exon
chr23:33709651-33709913
Coord C2 exon
chr23:33709264-33709560
Length
263 bp
Sequences
Splice sites
3' ss Seq
TCTCTGACTTGTTTCTGTAGCCC
3' ss Score
8.63
5' ss Seq
AAGGTTCGT
5' ss Score
8.44
Exon sequences
Seq C1 exon
AAGCAGTGTTTCCATGGAGACAGTGTCATCTCGCGGCCTGAAGCGCAGATTCGAGGAGGTGGACAGCGGCTCGCCGTGCTCCACACCCAAAGACTCAGATGATGACATCTCCAGCAGTGACAGCGCTGACAGCTGCGACAGTCTCAACGCTCCCTCCAGCTCCCTCACAC
Seq A exon
CCCCCTCCATTCTCAGAAGGCACAAAGTGTCTTTAGGACGTAAGCAGGTTCGCTTTGACGCAGTGACAGTCTACTACTTCTCCAGAAGGCAGGGCTTCACCAGTGTGCCCAGTCAGGGTGGAAGCTCCCTGGGCATGGCAAGGCATCACTGCGCTATACGACATTACACCCTTGGCGAGTTTGCACGAGAACAAGAAAGCAGCCACAAGCATGTACTTCGTCAACACTTACGGCAAGAAAAGCTCAACGCTCGCAAGCTAAAG
Seq C2 exon
CTGACACGGAACGGAACTGTAGATTGTCCTGAAGCGGAGTTGCTTACCTTGGACGACATATCTGATGAGGATTTGGATGTTGAGAGTGTAGAGGTGGATGACTGCTTCTTCCTGCAGCCCCTTCCAACCAAACGCCGTCGAGCACTACTGAGGGCTTCAGGTATCGCCCGAATAGATGCCAGAGAAAAGGCAGAGCTGCGTGCCATTCGTTTGTCCCGGGAGGAGTGTGGTTGTGACTGCCGATTCTATTGCGACCCACGGCACTGCGGCTGTAGCCAGGCTGGAATTAAGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075972-'1-4,'1-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.943 A=0.261 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCTCCAGCAGTGACAGC
R:
GCAGTCACAACCACACTCCTC
Band lengths:
307-570
Functional annotations
There are 1 annotated functions for this event
PMID: 19389623
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: coimmunoprecipitation, far western blotting, mutation analysis, pull down. ELM ID: ELMI002633; ELM sequence: TSILKR; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]