MmuEX6056519 @ mm9
Exon Skipping
Gene
ENSMUSG00000044636 | Csrnp2
Description
cysteine-serine-rich nuclear protein 2 [Source:MGI Symbol;Acc:MGI:2386852]
Coordinates
chr15:100314881-100320097:-
Coord C1 exon
chr15:100319866-100320097
Coord A exon
chr15:100318376-100318635
Coord C2 exon
chr15:100314881-100315177
Length
260 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTGCTCTGTTCATAGCAA
3' ss Score
8.42
5' ss Seq
AAGGTGCCT
5' ss Score
5.39
Exon sequences
Seq C1 exon
AGTCCTCATGTTCCTGGCTAGCTGGTGGTGAGCAGCTTGGGGCCATCGTGCTTGGCTCCCCGCGGACAACTTTGGAAGCCAATGGATGCGTTCTCCGGCTCAGGCCTCAAGAGGAAATTCGATGATGTGGACGTGGGCTCGTCAGTCTCCAACTCAGATGATGAGATGTCCAGCAGTGATAGTGCGGACAGCTGCGACAGCCTTAACCCTCCTACGACTGCCAGCTTCACAC
Seq A exon
CAACATCCATCCTGAAGAGGCAGAAGCAGCTACGGAGGAAGAATGTCCGCTTTGACCAGGTGACTGTGTACTACTTCGCCCGGCGACAGGGCTTCACCAGCGTGCCCAGCCAGGGTGGGAGCTCCTTGGGAATGGCCCAACGCCATAACTCTGTACGCAGCTACACCCTCTGTGAGTTTGCGCAAGAGCAGGAGGTGAACCATAGAGAGATTCTCCGTGAGCACCTGAAGGAGGAGAAACTTCACGCCAAGAAAATGAAG
Seq C2 exon
CTGACGAAGAACGGGACCGTGGAGTCAGTGGAGGCCGACGGCTTGACACTCGATGATGTCTCGGACGAGGACATCGACGTGGAGAATGTGGAGGTGGACGACTACTTCTTCCTTCAGCCCCTGCCCACCAAACGGCGGCGGGCCCTGCTCAGGGCTTCCGGGGTCCACCGGATTGACGCCGAAGAGAAGCAAGAACTCAGAGCCATCCGCCTGTCTCGGGAAGAGTGTGGTTGTGACTGTCGGCTGTACTGTGACCCAGAGGCATGCGCCTGTAGCCAGGCTGGGATTAAATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044636-'1-2,'1-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.686 A=0.264 C2=0.010
Domain overlap (PFAM):
C1:
NO
A:
PF098174=DUF2352=PU(32.6=35.6)
C2:
PF098174=DUF2352=PD(65.3=62.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGTGATAGTGCGGACAG
R:
AACCACACTCTTCCCGAGACA
Band lengths:
294-554
Functional annotations
There are 1 annotated functions for this event
PMID: 19389623
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: coimmunoprecipitation, far western blotting, mutation analysis, pull down. ELM ID: ELMI002633; ELM sequence: TSILKR; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: