HsaINT0042883 @ hg38
Intron Retention
Gene
NA
Description
NA
Coordinates
chr11:57808165-57808540:+
Coord C1 exon
chr11:57808165-57808292
Coord A exon
chr11:57808293-57808389
Coord C2 exon
chr11:57808390-57808540
Length
97 bp
Sequences
Splice sites
5' ss Seq
ACGGTACCT
5' ss Score
6.79
3' ss Seq
CTTTCTATTTGCTATTCTAGTAT
3' ss Score
7.75
Exon sequences
Seq C1 exon
GCTATGAGCTCTTATTTCAGCCAGAGGTGGTTCGGATATACATCTCACTTCTTAAGGAGAGCAAGACTCCTGCCATCCTAGAAGCCTCAGCTGGAGCTATCCAGAACTTGTGTGCTGGGCGCTGGACG
Seq A exon
GTACCTTTTAGAAAAGGGATTTGGAGATGGGAAAACTTAGATAACTAGTTTGCTGCCATTTGTAATTTGTTCCACCCCTTTCTATTTGCTATTCTAG
Seq C2 exon
TATGGTCGATACATCCGCTCTGCTCTGCGTCAAGAGAAGGCTCTTTCTGCCATAGCTGACCTCCTGACTAATGAACATGAACGGGTGGTGAAAGCTGCATCTGGAGCACTGAGAAACCTGGCTGTGGATGCTCGCAACAAAGAATTAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198561:ENST00000529919:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0051418=Arm=PD(95.0=88.4)
A:
NA
C2:
PF0051418=Arm=WD(100=76.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
ENSP00000351527, ENSP00000354785, ENSP00000354823, ENSP00000354907, ENSP00000403518, ENSP00000409930, ENSP00000413586, ENSP00000432041, ENSP00000432075, ENSP00000432243, ENSP00000432623, ENSP00000433158, ENSP00000433276, ENSP00000433334, ENSP00000434017, ENSP00000434672, ENSP00000434808, ENSP00000434900, ENSP00000434949, ENSP00000435266, ENSP00000435379, ENSP00000435494, ENSP00000435789, ENSP00000436323, ENSP00000436543, ENSP00000436744, ENSP00000437051, ENSP00000437156, ENSP00000437327
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCCATCCTAGAAGCCTC
R:
AGTGCTCCAGATGCAGCTTTC
Band lengths:
171-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development