GgaINT1010757 @ galGal4
Intron Retention
Gene
ENSGALG00000007330 | CTNND1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q5ZJ21]
Coordinates
chr5:16247521-16248440:-
Coord C1 exon
chr5:16248313-16248440
Coord A exon
chr5:16247672-16248312
Coord C2 exon
chr5:16247521-16247671
Length
641 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
GTGTTCTGCTCTCCCTGCAGTAC
3' ss Score
10.94
Exon sequences
Seq C1 exon
GCTATGAGCTCCTCTTCCAGCCGGAAGTGGTCCGGATATACATCTCCCTGTTAAAGGAGAGCAAGACTCCAGCCATCCTAGAGGCTTCAGCAGGAGCAATTCAGAATCTGTGTGCTGGCAACTGGACG
Seq A exon
GTGAGTGCCTTGTAGAGCTGGGCATGTTGGTGTTCATCAGTGTTGAAGGGAAGGGGGATTTGGGGAGCATCACTTTTTGGTGTCAACAGAGCTGTAAAGTGTCAAAGCTCTGGCATTCCAGGCTGTTGCAATTCATGTGGCTTGCTCTGAAGAAGACATAATTCAGCAGCACAGCTCCAATGTGGACTGCATCTCTCATGTACTGTTAAGGGCTCTTTGCTCTCTGCCAGCTGTTTCTTTCCAAGGGCTGCCTGTGTGTCTGCCTGCAGCCTCTTCTCTGCTGCCACTTCCCTTCTGCAGTCTGGAAGATGGGAGTGTAGGTTTGGGCCCACTCTGTAGTCCTACTGTGCCTTTGCTCTGTATTCTTTGTGCGTATGTAAAGATCAAACAAAATCGTGCTTACCTGGCTGACAGGTGGCTTTGACACCTGTAAATCAACCCTCTCCCATTCCCAGGCATTGCCTGGGGTTACTTGGAGATGGATCTGGGACCTTCACAGTGTCTCTGCCTATGGGCAAACCCGGGGCCATTGGTTTCCAAGGTGGGTGGGTGGTAAAGCTCCCAGTAGTGCCGCCATGCTCAGGAGCAGGGTGAAGCTGTGCCTGCCTGGGTTCCACCGTGGTGTTCTGCTCTCCCTGCAG
Seq C2 exon
TACGGCCGGTACATCCGCTCGGCACTCCGCCAGGAGAAGGGACTCTCTGCCATTGCTGACCTCCTGACTCATGACAGTGAACGTGTGGTGAAAGCAGCATCTGGAGCCCTCCGCAACCTGGCTGTTGACTTACGTAACAAAGAGCTGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007330:ENSGALT00000011857:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0051418=Arm=PD(95.0=88.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATGAGCTCCTCTTCCAGC
R:
CGTAAGTCAACAGCCAGGTTGC
Band lengths:
262-903
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]