BtaINT0045093 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002411 | CTNND1
Description
catenin (cadherin-associated protein), delta 1 [Source:HGNC Symbol;Acc:HGNC:2515]
Coordinates
chr15:82320574-82320954:+
Coord C1 exon
chr15:82320574-82320701
Coord A exon
chr15:82320702-82320803
Coord C2 exon
chr15:82320804-82320954
Length
102 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
3' ss Seq
TTTCCATGTGCTCCTTGTAGTAT
3' ss Score
7.64
Exon sequences
Seq C1 exon
GTTATGAGCTTTTATTTCAGCCGGAGGTGATTCGGATATACATCTCACTCCTCAAAGAGAGCAAGAATCCCGCCATCCTAGAAGCGTCAGCTGGGGCCATCCAGAACTTGTGTGCTGGGCGCTGGACG
Seq A exon
GTGAGACCCTTGTACAAGATGCATTTGGGGATGGAAGGACTTAGCTTACTCTTTTGCTATCGTTTGTAATCTGTTCTGCTTCTTTCCATGTGCTCCTTGTAG
Seq C2 exon
TATGGTCGATACATCCGCTCAGCTCTGCGTCAAGAGAAAGCTCTTTCCGCCATTGCTGACCTCCTGACCAATGAACACGAGCGGGTTGTGAAAGCTGCATCTGGAGCCCTGAGAAACCTGGCTGTGGATGCGCGCAACAAAGAGTTGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002411:ENSBTAT00000043778:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0051418=Arm=PD(95.0=88.4)
A:
NA
C2:
PF0051418=Arm=WD(100=76.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCTTTTATTTCAGCCGGAG
R:
AGGTTTCTCAGGGCTCCAGAT
Band lengths:
243-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development