HsaINT0042890 @ hg38
Intron Retention
Gene
NA
Description
NA
Coordinates
chr11:57791385-57794081:+
Coord C1 exon
chr11:57791385-57791673
Coord A exon
chr11:57791674-57794009
Coord C2 exon
chr11:57794010-57794081
Length
2336 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
TCTTGTGGGCTGTGTTTCAGAAC
3' ss Score
8.03
Exon sequences
Seq C1 exon
TGTGAAGTGAGGGGGTCTCTCTCCCTCCTTCTCCTTCCTCTGTGATTCACCTTCCTTTTTACCCTGCCCTGCGGCGGCTCCGCCCCTTACCTTCATGGACGACTCAGAGGTGGAGTCGACCGCCAGCATCTTGGCCTCTGTGAAGGAACAAGAGGCCCAGTTTGAGAAGCTGACCCGGGCGCTGGAGGAGGAACGGCGCCACGTCTCGGCGCAGCTGGAACGCGTCCGGGTCTCACCACAAGATGCCAACCCACTCATGGCCAACGGCACACTCACCCGCCGGCATCAG
Seq A exon
GTAACCCCTCTCTCCATCAGACGTGCAGGTAGGACTTTGGCATGGTCACAGAGAGGCTATGATCCTTTTTGGGAAGCTACTCTCCTTTTGGTGATGGGCTGTCCAGTGCCCGTTCTTCCAGGGATTTTTTTCCAGGGGTGTTAAATGCTGATAAGAGACAAGGAATATTGCTGCTGGACTGAGCTGGGTGCAGTTACTATCTCTAGAAGCATCCATCTGACTTCCTGTTTTGCTGGAGTAGGTTTTTTGGGGTGGGCTACAATTCTAGTAATGGTAGATAGTTTAGTTTGCAGCTGTACTCAAGTTACTTTTCTTTTCTGATTTTTTTTTCTTGGTATCAAAAAATCAGGAAAGTAAATGCCCACTTAATGGTTGGGCATCTTGTGCTCTCAGCCCTAGTTCAGTCTCCCTGAGGGAACAGTCTGTACCCAGGTGTGGCAGTATCCATAAATTGTGTACTCCTGCTCCATATTGTCCTTGTGTGCTCTTTTTGTTGGCTGTGTAAATCATGTGTTGGAGGAAGGGGTCATTGTTAATTCTGTTGGTTAGAGTTGGAGAGGGAGCATCATGCTGCTGTTTAACCCAAATAACCACAGGAGCCAGTGGTCTCTGGGTTGGCTGACTCTGTGATGTGACTTGGGAGAGTTGGTGTTAGAAATGAGAAGTATCTTGTGTTTCCTCTGGTTTTTCTAGTCTGACTTTGCTGTGATGTAATCTGTCTGAGGTTTTGTCTGTCTTCCTCTGTGTGTGTGTGCGTGTGTGCGCGCGCACTCGCGCATGTGTGTGTGTGGTAGACATTGCCTGATAGATTGCATCTTACGAGAGATCTCTGAGTGGGAACCAGAACAGTACTCATGCCCTGATAGTCCTTTTCATTGAGTAATTTTTATTTATTTATTTAAATAGGAGTGCAGTGGTGCAATCTTGGCTCACTGCAACGTTCGCCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGTGTGCCACCACACCCAGCCAATTTTTGTAGTTTTAGTAGAAATGGGGTTTCACCATGTTGGCCAGGATGGTCTCGATCTCTTGACCTCGTGATCCACCTGCCTCGGCCTCCCAAAGTACTGGGATTACGCGTGAGCTACTGCACCCGGCTGAGTGATTTTTTTTTTTTTTTTTTTAAGATAGAGAAAGTCCCTCATACTGAGGAGCCTTGCAGTTGAGAGAGAACAGAATTCCAGTTGGAGGATCAAGGAATTTGAGGGAGGCAGCATGCTTGCAGTGTTCCTAGGATTTTTACAGGAACTACAATAGAAAGTTAGGGATGAAATTATATTGAAAGGAGAAAGCTGGACTGCTCAGGTTTGGAGGTCATGGGGAATTCCAGGATTCAGTATGTGGTTGCTCTCTTATTTTTAACTTCTGCTTAGCAGTAAAACCACACCCTTCCTTCTTCCTGAAAGTAATGTTTAACTTCCTCTCCCTGCAGCATTACACTCTATGTAATGGGAGTGGGGTGGAGGAAGAGTCTCCCAAGGTGGTTGGATCTCACTATTCTACTGGAAGAGGAGCAGGCAAATATATTTTTATGTGGTATAATGTCATTAGATTATTTCCTGCTGCTTAAGACAGAGCAACTTCTGGATGACATTTTGGAATGTATTCTGTGGCTCTAATAATTGTTGGTAAAGATATTGAGCCTTCTGTTTTCTTGAGGGGAGTTGGGGTGCTTGTTTTTGTACTTGGAAAGGGAGACTCGTATCTCTTGCTTTTTTCTTTAATTAAATTTCTGTTTTTTACATTAGGACATGATAGCCATCTTGCTTCTTTCTTTAAAAAGCTGCCTGGAATGGGAGTTTCCAGTGGTAGTACTGCATGAAGATTCATGAGACTATAAAGCTCTTTGGAAACCCCCCAACTTAGCCCTTCCAACTTTCCTTACATTTTTATGGCTTTCCAAAAAGGTTGCATGTAAGGGAAATTATCTAGGTCTGTGCTGTTTATTCAGCAAATAGTTTTTGAGCACCTGTTATGTGCCAGGCACTGTTCAAGGCACTAGACTAAACTAAACTTATCCCAAAAAACCCTCTGCCCTCGTGGAGTTTACGTTCTTATGTTCCAGAGACCCTGTCTGCCAGAGTTCCAGGCCTGATTTTCAATTTTGAGGAAAGTGCTAAGACTAAAGAGTGAATGGTTCTTTTATGAGTACTGACACAAGGACTCCAGGCCACACATATCTTCTTGAAAGCCCTTTTCCTGTTTGAAAAAAAGATCGTTTGTATTTGATAGAGCAAAAGAAGGCCACAAAATGAATTGTCTTCTTGTGGGCTGTGTTTCAG
Seq C2 exon
AACGGCCGGTTTGTGGGCGATGCTGACCTTGAAAGACAGAAATTTTCAGATTTGAAACTCAACGGACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198561:ENST00000529919:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
ENSP00000351527, ENSP00000354785, ENSP00000354823, ENSP00000354907, ENSP00000413586, ENSP00000431600, ENSP00000432041, ENSP00000432243, ENSP00000432299, ENSP00000433276, ENSP00000433334, ENSP00000434808, ENSP00000435379, ENSP00000435494, ENSP00000435789, ENSP00000436323, ENSP00000436543, ENSP00000436744
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development