MmuINT0043550 @ mm10
Intron Retention
Gene
ENSMUSG00000034101 | Ctnnd1
Description
catenin (cadherin associated protein), delta 1 [Source:MGI Symbol;Acc:MGI:105100]
Coordinates
chr2:84622011-84624558:-
Coord C1 exon
chr2:84624270-84624558
Coord A exon
chr2:84622083-84624269
Coord C2 exon
chr2:84622011-84622082
Length
2187 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
TTTTGTGGGCTCTGTTTCAGAAC
3' ss Score
8.88
Exon sequences
Seq C1 exon
TGTGAAGTGAGGGGACCTACTCCCTCCTTTCTACTCCCTCTGTGGTCCACCTTACTTTTTATCCTGCCCTGCGGCGGCTCCTCCCCTTACCTTCATGGACGACTCAGAGGTGGAGTCGACCGCCAGCATCTTGGCCTCTGTGAAAGAACAAGAGGCCCAGTTTGAGAAGCTGACCCGGGCGCTGGAAGAGGAGCGGCGCCATGTCTCGGCGCAACTGGAACGCGTCCGGGTCTCACCACAAGATGCCAACTCACTCATGGCCAATGGCACCCTCACTCGTCGGCATCAG
Seq A exon
GTAACCCTCTCTCCTTTAGACCTGCAGGTAGGACATTGGCATGGTCACAACTGAGGCCTATATATCCTTAGTGAGATACTACTGGCCCTGGGCTGTCCAGTGCTTATACTTCACGATGAACTGTTCCAGGGATATTATAAATGCTGATTAAGAAATAAGGGATTTGTTACTGATCTGAGTTGAGTGGACTTTAGAAACCCTTTGTAATTTCCTGTTTTGCTAGAGTGGATTTTCTGGACAGGAATGCAGTTCTAGTTATTTCTAGTTATGATACTGTACTTTGGAGCTACACACAGAGTCACTTCTGTTTTCTTTGAAATATCTTTTTTCTCAGGGTCAAAAATTAGGAAAGTATATCTACTTAGCGGTTGGGGAAGTTGGGCATCTTGAGCTCCTAGCTCCAGTTCAGTCTCAAGTAGAGAACAGTCTGTTCTCAGAAAGTTGTTAGAGTGTTCATAATTGTATATTCCTTTCCCTATGTCCTTGTGTGCTTATTGTTGGGTGAGGAAGTCATGTTTTGGAAGAAGGAGTCATTGTTACTTTTACTGGTTAGAGCTGGGGGAGGGGAGATATCATGCTATTATTTAACTCAGATAACCACAGGAGCCAGTAGTGGTCTCTGCATTGGCTGGCTTCGATGTGACTTGGGAGGACAGGTGATAGAAATGAGAAGTATTTGTGTTCCCTGTGGTTTATGTCTGACTTTGCTGGGGTGTAATCTGAGGTTTTGCCAGTGAGTGTGAACACGCATAGGCTGGGTGGGTACTGCATTAGTGGACTGACTCTATAGAGCTCTGAGTGGAATTAGAACAGTGCTTACACTCAGTTCTTTTAACTGATTATTTATTTGTTTTTATCTGTTTGTTTGTGCAAGGGATTGACCCTAGAGCCCTGAACATGCTAGACAAATGCTTTACCACAGAGCTATGTCCTAGACTCTTTACTTACTTACTTATGTATGAGGAGCTGGGGATGGAATCCTGGGTCTTGTGCATGCCACTAAACAACATTTCCAGACCTTTGGGTCTGTGAAGATTAGGTATTGGTACATAGCTCAGGTTGACCTCAACCTTGTGGTCCTCTTGTCTCTGTTTCCCTAGTGCTAGGGTTACAATCGTGCCCAGTTGCTTGCTTAATCCTTAAGCTAGTAGATATCATTTGAATAATCAGGACCATGAAATAAACAACAACGTTCAAGGAAATTTTCAGGAACTTGAGTGTAGAGAGTTAGGGATGAGACACACTGAAGGAAAGTGGGGTGCTCAGACTTTAAGGTGGTGGGGAATCCCAGGATTTAGTGGTTTATCTTCTTCTTTTATTTTTAACCTCTGCTCTGCAATGAAACCACACCCTTCCTTCTTCCTGAAAGCAATGGTTAACTTCCTCCCCTGCTGCAGCATTACACTGCATGTAAAGGGGGAATGGGTGGAAGAAGATCCCAAGGTTATTGGATCTAGTTGTATTCTGTTGGGAGGGGCAAGACATGTGCTTTATATATGCAGTCTCATTAGGTTATGTCTTGGTGCTTAACATAGAACAATTTAACAACGTTTGAGAATGTGTTCTGTAGCTGTAACTTGTTAAAGACGTTGAAGACTTTTTTTGAGGGGCGTTGCTGAGTACTTTCCTTCGTATTTGGAAATGGAGAATTTACTCTCTTCATTCAAGAGCTTCCTGGAATGGGAGTTTACCCTGGTACCACAGCTTGAAGATTCCTAGAACGATAATAAAAGGAGGCTTTTTGTGGACACCCTCCCCCCTTCCGCCACCCCCCATTGTAGCCTTCCTAACTTACATTCTTAAAGCTTTCCAAAAGGTTTTCTGTAGGGAGCTTACCTGAGTCTGTGTTATTAAGCAAATGGTCTTTGAATGCTTCTAATGTGCCAAGTACTGTTCAAGATGTTAGGGATGTTAGTAGCCTTGAAACTACTGGACTCAAACCCTGTGTACTCATGGAACTTACATTCTCATGCTCCAGAAATCCCACCTGCCAGAATTCTAGGCCTGTAGAGGAAAGTGGTATCTAAGATTGTTATGGAGTGTTATGGTTCTTATGTGAGTACCGACAGAAGGATTTCAGTCCACAAATACCTTCTCAAAAGCCCTTTCATTTTTGAAAGAAAGATGCTGTCTTAGACAGAACAAAGGTCAGCCAGAACATGAATTGTTTTGTGGGCTCTGTTTCAG
Seq C2 exon
AACGGCCGGTTTGTGGGCGATGCTGACCTTGAGAGACAGAAATTTTCAGATCTGAAACTCAACGGACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034101:ENSMUST00000111691:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.912 A=NA C2=0.892
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
ENSMUSP00000042543, ENSMUSP00000064518, ENSMUSP00000065252, ENSMUSP00000107313, ENSMUSP00000107314, ENSMUSP00000107315, ENSMUSP00000107316, ENSMUSP00000107317, ENSMUSP00000107318, ENSMUSP00000107319, ENSMUSP00000107320, ENSMUSP00000107321, ENSMUSP00000107322, ENSMUSP00000107324, ENSMUSP00000107325, ENSMUSP00000107326, ENSMUSP00000141166
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types