RnoINT0043150 @ rn6
Intron Retention
Gene
ENSRNOG00000030790 | Ctnnd1
Description
catenin delta 1 [Source:RGD Symbol;Acc:1305643]
Coordinates
chr3:72024077-72026591:-
Coord C1 exon
chr3:72026303-72026591
Coord A exon
chr3:72024149-72026302
Coord C2 exon
chr3:72024077-72024148
Length
2154 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
TCTTGTGGGCTATGTTTCAGAAC
3' ss Score
6.25
Exon sequences
Seq C1 exon
TGTGAAGTGAGGGGACCTACTCCCTTCTTTCTACTCCCTCTGTGGTCCACCTTACTTTTTATCCTGCCCTGCGGCGGCTCCTCCCCTTACCTTCATGGACGACTCAGAGGTGGAGTCGACCGCCAGCATCTTGGCCTCTGTGAAAGAACAAGAGGCACAATTTGAGAAGCTGACCCGGGCGCTGGAGGAGGAGCGGCGCCATGTGTCGGCGCAACTGGAACGCGTCCGGGTCTCACCACAAGATGCCAACTCACTCATGGCCAACGGCACCCTCACCCGTCGGCATCAG
Seq A exon
GTAACCCTTTCTCCATCAGACCTGCAGGTAGGACGTTGGCATGGTTGCAACTGAGGCCTACAGATCCTTAATGAGATGCTACTGGCCCTGGGCTGTCCAGTGTTTACACTTGACGGTGAACTGTTCCAGGAATATTATAAATGTTGATTAAGAAATAAGGGATTTGTTACTGATCTGAGTTGGATGGACTTTAGAAACCCTTTGTGACTTCCTGTTTTGGATAGGGATGCAGTTCTAGTTATTTCTAGTTATGGTACTGTATTTTGTAGCTACACTCAGAGTCACTTCTGTTTTCCTTGAAATATCTTTTTTTCTCAGGGTGAAAAATTAGGAGAGTATATCTACTTAGTGGTTGGGGAAGTTGGGCATCTTGAGCTCCTAGCTCCAGTTCAATCTCAACTAGCGAACAATCTGTTCTCAGAAAGTGTTACAGTGTTCATAAATCCCCAATATTCATATTCCTTTCCCATATGTCCTTGTGTGCTTATTGTTGGGTGTGTAAACCATGTTTTGGAAGAAGAGATCATTGTTACTTTTGCTGGTTAGAGCTGGAGAGGGGGCATCATGCTATTATTTAACCCAGATAACCACAGGAGCAGCAGTAGTCTCAGGGTTGGCTGACTTAGATGTGACTTGGGAGGACTGGTGTTAGAAGTGAGAAGTATATTGTGTTCCCTAAGGTTTATGTCTGACTTTACTGTAATGTATCTGAGTGAATGTGCACGCACACATGCTGGGCACTGCTTGAGTAGACTGATCCTCTAGAGGTCTGAGTGGCATTAGAACAGGGCTCACACTTCGTCCTTATTTGATTGCTTATTTGTTTTTTGTGTGTTTGTTTGTCTTGTAGCTAGGGATTGACCCTAGAGCCCTGACCATGCTAGGCAAATGCTTTACCATAGAACATATCCTAGACTATTTACTAACGTACGTGTGAGGAGCTAGGGATGGAAACCTGGCTCTTGTACATGCCACTAAACAACATTTCCAGACCTTTGGGTTTTTGAAGACTAGGTATTGGTATATAGCTCAGGTTGACCTCAAACTTGTGATCCTCTTGCCTCTGCTTCCCTGGTGCTAGGTTACACTCATGCCCAGCTGCTTGCCTAATCCTTAGACTAGTAGATATAATTTGAAATAATCAGGACCATGAAATAAACAAGAGACCATGTATGCAGTGTTCGGGGAACTTTTCAGGAACTTGAGCAGAGAGAGTTAGGGATGAGATGCATTGAAGGAAAGTGGGGGTGCTCAGACTTAAGGTGGTGGAGAATCCCAGGATTTAGTGGTTTCTCTTGTCCTTTTATTTTTAACCTCTGCTCAGCAATGAAACCACACCCTTCCTTCTTCCTGAAGCAATGTTTAACTTCCTCCCCCTGCAGCATTACACTGTATGTAAAGGGAGAATGAGTGGAGGAAGAATATCCCAAGGTTGTTGGGTCTTACTGTATTCTATTCGGAGAGGAGCTTTTATATATACAGTCTCATTAGGTTATGTCTTGGTGCTTAAAATAGAGTAATTTAAGGACTTTTGTGAATGTGTTCTGTGGCCGTAACTTCATAAAGATGCTAAGATTTTTTTCTTGAGGGCCATTGTTGAGGACTTTCTTTCATATTCGGAAATTAATTCTCTTCTTTAAAAAGTCTCCTGGCATGGGAGTTTCCCATGGTACCACAGCATGAAGATCCCTAGAATAATAGAAGAAGGCTTTTTTGGGACACCCACCACCCCATTGTAGCTTTCCTAACTTACATTCTTAGGACTTTCTAAAAAGGTTATATGTAGGGAACTTACCTGAGTATGCTATTTATTCAGCAAATGGTCTTTGAATGCTTCTCATGTGCCAAACACTGTTCAAGAAATCAGGCATACGGTAGCCTTGAAACTACTGAACTCAACCTTTGTGTACTCAGGGAACTTACGCTCTTGTGTTCCAGAGACCCCGCCTGCCAGAATTCTAGGCCCCATTCCAATTTAGAGGAAAGTGCTATCTTAAGATTGAGGAGTATTACGGTTCTTATGGTAATACTGACACAAGGATTTCAGTCCACAAATACTTTCTCAAAAGCCCTTTCGTTTTTGAAAGAAAGATGTTGTCTTTGACAGAACAAAGGACAGCCAGAAAATGAATTGTCTTGTGGGCTATGTTTCAG
Seq C2 exon
AACGGCCGGTTTGTGGGCGATGCTGACCTTGAGAGACAGAAATTTTCAGATTTGAAACTCAACGGACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030790:ENSRNOT00000064009:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.877 A=NA C2=0.757
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]