HsaINT0042890 @ hg19
Intron Retention
Gene
ENSG00000198561 | CTNND1
Description
catenin (cadherin-associated protein), delta 1 [Source:HGNC Symbol;Acc:2515]
Coordinates
chr11:57558857-57561553:+
Coord C1 exon
chr11:57558857-57559145
Coord A exon
chr11:57559146-57561481
Coord C2 exon
chr11:57561482-57561553
Length
2336 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
TCTTGTGGGCTGTGTTTCAGAAC
3' ss Score
8.03
Exon sequences
Seq C1 exon
TGTGAAGTGAGGGGGTCTCTCTCCCTCCTTCTCCTTCCTCTGTGATTCACCTTCCTTTTTACCCTGCCCTGCGGCGGCTCCGCCCCTTACCTTCATGGACGACTCAGAGGTGGAGTCGACCGCCAGCATCTTGGCCTCTGTGAAGGAACAAGAGGCCCAGTTTGAGAAGCTGACCCGGGCGCTGGAGGAGGAACGGCGCCACGTCTCGGCGCAGCTGGAACGCGTCCGGGTCTCACCACAAGATGCCAACCCACTCATGGCCAACGGCACACTCACCCGCCGGCATCAG
Seq A exon
GTAACCCCTCTCTCCATCAGACGTGCAGGTAGGACTTTGGCATGGTCACAGAGAGGCTATGATCCTTTTTGGGAAGCTACTCTCCTTTTGGTGATGGGCTGTCCAGTGCCCGTTCTTCCAGGGATTTTTTTCCAGGGGTGTTAAATGCTGATAAGAGACAAGGAATATTGCTGCTGGACTGAGCTGGGTGCAGTTACTATCTCTAGAAGCATCCATCTGACTTCCTGTTTTGCTGGAGTAGGTTTTTTGGGGTGGGCTACAATTCTAGTAATGGTAGATAGTTTAGTTTGCAGCTGTACTCAAGTTACTTTTCTTTTCTGATTTTTTTTTCTTGGTATCAAAAAATCAGGAAAGTAAATGCCCACTTAATGGTTGGGCATCTTGTGCTCTCAGCCCTAGTTCAGTCTCCCTGAGGGAACAGTCTGTACCCAGGTGTGGCAGTATCCATAAATTGTGTACTCCTGCTCCATATTGTCCTTGTGTGCTCTTTTTGTTGGCTGTGTAAATCATGTGTTGGAGGAAGGGGTCATTGTTAATTCTGTTGGTTAGAGTTGGAGAGGGAGCATCATGCTGCTGTTTAACCCAAATAACCACAGGAGCCAGTGGTCTCTGGGTTGGCTGACTCTGTGATGTGACTTGGGAGAGTTGGTGTTAGAAATGAGAAGTATCTTGTGTTTCCTCTGGTTTTTCTAGTCTGACTTTGCTGTGATGTAATCTGTCTGAGGTTTTGTCTGTCTTCCTCTGTGTGTGTGTGCGTGTGTGCGCGCGCACTCGCGCATGTGTGTGTGTGGTAGACATTGCCTGATAGATTGCATCTTACGAGAGATCTCTGAGTGGGAACCAGAACAGTACTCATGCCCTGATAGTCCTTTTCATTGAGTAATTTTTATTTATTTATTTAAATAGGAGTGCAGTGGTGCAATCTTGGCTCACTGCAACGTTCGCCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGTGTGCCACCACACCCAGCCAATTTTTGTAGTTTTAGTAGAAATGGGGTTTCACCATGTTGGCCAGGATGGTCTCGATCTCTTGACCTCGTGATCCACCTGCCTCGGCCTCCCAAAGTACTGGGATTACGCGTGAGCTACTGCACCCGGCTGAGTGATTTTTTTTTTTTTTTTTTTAAGATAGAGAAAGTCCCTCATACTGAGGAGCCTTGCAGTTGAGAGAGAACAGAATTCCAGTTGGAGGATCAAGGAATTTGAGGGAGGCAGCATGCTTGCAGTGTTCCTAGGATTTTTACAGGAACTACAATAGAAAGTTAGGGATGAAATTATATTGAAAGGAGAAAGCTGGACTGCTCAGGTTTGGAGGTCATGGGGAATTCCAGGATTCAGTATGTGGTTGCTCTCTTATTTTTAACTTCTGCTTAGCAGTAAAACCACACCCTTCCTTCTTCCTGAAAGTAATGTTTAACTTCCTCTCCCTGCAGCATTACACTCTATGTAATGGGAGTGGGGTGGAGGAAGAGTCTCCCAAGGTGGTTGGATCTCACTATTCTACTGGAAGAGGAGCAGGCAAATATATTTTTATGTGGTATAATGTCATTAGATTATTTCCTGCTGCTTAAGACAGAGCAACTTCTGGATGACATTTTGGAATGTATTCTGTGGCTCTAATAATTGTTGGTAAAGATATTGAGCCTTCTGTTTTCTTGAGGGGAGTTGGGGTGCTTGTTTTTGTACTTGGAAAGGGAGACTCGTATCTCTTGCTTTTTTCTTTAATTAAATTTCTGTTTTTTACATTAGGACATGATAGCCATCTTGCTTCTTTCTTTAAAAAGCTGCCTGGAATGGGAGTTTCCAGTGGTAGTACTGCATGAAGATTCATGAGACTATAAAGCTCTTTGGAAACCCCCCAACTTAGCCCTTCCAACTTTCCTTACATTTTTATGGCTTTCCAAAAAGGTTGCATGTAAGGGAAATTATCTAGGTCTGTGCTGTTTATTCAGCAAATAGTTTTTGAGCACCTGTTATGTGCCAGGCACTGTTCAAGGCACTAGACTAAACTAAACTTATCCCAAAAAACCCTCTGCCCTCGTGGAGTTTACGTTCTTATGTTCCAGAGACCCTGTCTGCCAGAGTTCCAGGCCTGATTTTCAATTTTGAGGAAAGTGCTAAGACTAAAGAGTGAATGGTTCTTTTATGAGTACTGACACAAGGACTCCAGGCCACACATATCTTCTTGAAAGCCCTTTTCCTGTTTGAAAAAAAGATCGTTTGTATTTGATAGAGCAAAAGAAGGCCACAAAATGAATTGTCTTCTTGTGGGCTGTGTTTCAG
Seq C2 exon
AACGGCCGGTTTGTGGGCGATGCTGACCTTGAAAGACAGAAATTTTCAGATTTGAAACTCAACGGACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198561-CTNND1:NM_001085462:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.908 A=NA C2=0.792
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
ENSP00000351527, ENSP00000353902, ENSP00000354785, ENSP00000354823, ENSP00000354907, ENSP00000381996, ENSP00000413586, ENSP00000431600, ENSP00000432041, ENSP00000432243, ENSP00000432299, ENSP00000433276, ENSP00000433334, ENSP00000434808, ENSP00000435379, ENSP00000435494, ENSP00000435789, ENSP00000436323, ENSP00000436543, ENSP00000436744
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)