HsaEX0017870 @ hg19
Exon Skipping
Gene
ENSG00000198561 | CTNND1
Description
catenin (cadherin-associated protein), delta 1 [Source:HGNC Symbol;Acc:2515]
Coordinates
chr11:57558857-57563201:+
Coord C1 exon
chr11:57558857-57559145
Coord A exon
chr11:57561482-57561553
Coord C2 exon
chr11:57563049-57563201
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCTTGTGGGCTGTGTTTCAGAAC
3' ss Score
8.03
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
TGTGAAGTGAGGGGGTCTCTCTCCCTCCTTCTCCTTCCTCTGTGATTCACCTTCCTTTTTACCCTGCCCTGCGGCGGCTCCGCCCCTTACCTTCATGGACGACTCAGAGGTGGAGTCGACCGCCAGCATCTTGGCCTCTGTGAAGGAACAAGAGGCCCAGTTTGAGAAGCTGACCCGGGCGCTGGAGGAGGAACGGCGCCACGTCTCGGCGCAGCTGGAACGCGTCCGGGTCTCACCACAAGATGCCAACCCACTCATGGCCAACGGCACACTCACCCGCCGGCATCAG
Seq A exon
AACGGCCGGTTTGTGGGCGATGCTGACCTTGAAAGACAGAAATTTTCAGATTTGAAACTCAACGGACCCCAG
Seq C2 exon
GATCACAGTCACCTTCTATATAGCACCATCCCCAGGATGCAGGAGCCGGGGCAGATTGTGGAGACCTACACGGAGGAGGATCCTGAGGGAGCCATGTCTGTAGTCTCTGTGGAGACCTCAGATGATGGGACCACTCGGCGCACAGAGACCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198561-'5-6,'5-4,6-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.908 A=0.792 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF046727=Methyltransf_19=PU(62.3=94.1)
Other Inclusion Isoforms:
ENSP00000351527, ENSP00000353902, ENSP00000354785, ENSP00000354823, ENSP00000354907, ENSP00000381996, ENSP00000413586, ENSP00000431600, ENSP00000432041, ENSP00000432243, ENSP00000433276, ENSP00000433334, ENSP00000434808, ENSP00000435379, ENSP00000435494, ENSP00000435789, ENSP00000436323, ENSP00000436543, ENSP00000436744
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGGGTCTCACCACAAGATG
R:
TACAGACATGGCTCCCTCAGG
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)