GgaEX6037423 @ galGal3
Exon Skipping
Gene
ENSGALG00000007330 | Q5ZJ21_CHICK
Description
NA
Coordinates
chr5:18140146-18152675:-
Coord C1 exon
chr5:18152547-18152675
Coord A exon
chr5:18140537-18140608
Coord C2 exon
chr5:18140146-18140304
Length
72 bp
Sequences
Splice sites
3' ss Seq
AATGGTGATATGCATTTCAGAAC
3' ss Score
5.76
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATTATCTCGCTTAGCAGTTTAGCAATCGGGAGCGGGCAGATCCTCCCGTCCTCCCCAGCGCCCCAGTCCCGCCGGCGCCGGACCAGAGGCGAGGCAGAGGACCCCCAAACTCCGCCCGGCTGCTCGCAG
Seq A exon
AACGGCCGTTTCTTGGGTGATGCTGACCTGGAAAGACAGAAGTTCCCAGATCTGAAGCTCAACGGACCACAG
Seq C2 exon
GACCACAGCCACCTCTTGTACAGCACAATCCCCAGAATGCAGGACCCAGGCCAGATCGTGGAGGAGACATACACCATGGAGGAGGACCCAGAAGGGGCCATGTCTGTTGTTTCTGTGGAGACATCGGATGACGGGACAACCCGACGCACAGAGACCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007330-'0-1,'0-0,8-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.913 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTTAGCAGTTTAGCAATCGG
R:
GGTCCTGCATTCTGGGGATTG
Band lengths:
168-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]