RnoEX0025207 @ rn6
Exon Skipping
Gene
ENSRNOG00000030790 | Ctnnd1
Description
catenin delta 1 [Source:RGD Symbol;Acc:1305643]
Coordinates
chr3:72022865-72052990:-
Coord C1 exon
chr3:72052712-72052990
Coord A exon
chr3:72024077-72024148
Coord C2 exon
chr3:72022865-72023017
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCTTGTGGGCTATGTTTCAGAAC
3' ss Score
6.25
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GCCTTTGGCTGGGTGCAACTTCCATTTTAGGTGTTGGATCTGAGGGGAAAAAGAGAGAGGGAAAGGGAGAGAGAGAACGAGGGCGAGCAAGAGGGAGGGAGAGAGAGCGAGAGAGCGAGAGAGGCCGACAGACACGAAGGGAGAGGAGAAAGGCAGAAAGATCGTGGAACGAGGAAGAGGAAGAGGCGGCGAACCTCGCTGGATTCGTCTTTCTCAGCACATTGGTGAAGCTTTGGGTTTGTTTCTTAAAAGGACTGGCTTTAGAAGTCCACATTTGAG
Seq A exon
AACGGCCGGTTTGTGGGCGATGCTGACCTTGAGAGACAGAAATTTTCAGATTTGAAACTCAACGGACCCCAG
Seq C2 exon
GATCACAACCACCTTCTGTATAGCACTATCCCCAGGATGCAGGAGCCAGGTCAGATCGTGGAAACCTACACAGAGGAGGACCCTGAAGGAGCCATGTCTGTTGTTTCTGTGGAGACCTCAGATGATGGGACCACTAGGCGCACAGAGACCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030790_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.757 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAGAAAGATCGTGGAACG
R:
TCCTGCATCCTGGGGATAGTG
Band lengths:
173-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]