GgaEX1018134 @ galGal4
Exon Skipping
Gene
ENSGALG00000007330 | CTNND1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q5ZJ21]
Coordinates
chr5:16255486-16257357:-
Coord C1 exon
chr5:16257038-16257357
Coord A exon
chr5:16255877-16255948
Coord C2 exon
chr5:16255486-16255644
Length
72 bp
Sequences
Splice sites
3' ss Seq
AATGGTGATATGCATTTCAGAAC
3' ss Score
5.76
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TGAAGAGTGGGGCTCCTCCCCTTCTGGGTCACTTTTCCTCCTCTCACCTTGACACCAAGCCAACTCTGCTTGTGCCTCCCTGTGCCCTTCGCCCCTTCCCCGCCCGTCCTGGGTAACCGTCACCCATGGACGACTCGGAAGTGGAGTCAACCGCCAGCATCCTTGCCTCTGTCAAGGAGCAGGAGGCGCAGTTTGAGAAGCTGACACGGGCGCTGGAGGAGGAGCGGCGCCATGTCTCAGCCCAGCTGGAACGAGTGCGGGTCTCCCCACAGGACGCCGGCCCGGGCTTGGCCAACGGCACACTCTCCCGGCGGCACCAG
Seq A exon
AACGGCCGTTTCTTGGGTGATGCTGACCTGGAAAGACAGAAGTTCCCAGATCTGAAGCTCAACGGACCACAG
Seq C2 exon
GACCACAGCCACCTCTTGTACAGCACAATCCCCAGAATGCAGGACCCAGGCCAGATCGTGGAGGAGACATACACCATGGAGGAGGACCCAGAAGGGGCCATGTCTGTTGTTTCTGTGGAGACATCGGATGACGGGACAACCCGACGCACAGAGACCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007330-'20-7,'20-6,25-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCCTCTGTCAAGGAGCAG
R:
GCTGTACAAGAGGTGGCTGTG
Band lengths:
183-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]