MmuEX0013074 @ mm10
Exon Skipping
Gene
ENSMUSG00000034101 | Ctnnd1
Description
catenin (cadherin associated protein), delta 1 [Source:MGI Symbol;Acc:MGI:105100]
Coordinates
chr2:84620835-84624558:-
Coord C1 exon
chr2:84624270-84624558
Coord A exon
chr2:84622011-84622082
Coord C2 exon
chr2:84620835-84620987
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTTTGTGGGCTCTGTTTCAGAAC
3' ss Score
8.88
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
TGTGAAGTGAGGGGACCTACTCCCTCCTTTCTACTCCCTCTGTGGTCCACCTTACTTTTTATCCTGCCCTGCGGCGGCTCCTCCCCTTACCTTCATGGACGACTCAGAGGTGGAGTCGACCGCCAGCATCTTGGCCTCTGTGAAAGAACAAGAGGCCCAGTTTGAGAAGCTGACCCGGGCGCTGGAAGAGGAGCGGCGCCATGTCTCGGCGCAACTGGAACGCGTCCGGGTCTCACCACAAGATGCCAACTCACTCATGGCCAATGGCACCCTCACTCGTCGGCATCAG
Seq A exon
AACGGCCGGTTTGTGGGCGATGCTGACCTTGAGAGACAGAAATTTTCAGATCTGAAACTCAACGGACCCCAG
Seq C2 exon
GATCACAACCACCTTCTGTACAGCACTATCCCCAGGATGCAGGAGCCAGGACAGATTGTGGAAACCTACACCGAGGAGGACCCTGAAGGAGCCATGTCTGTTGTTTCTGTGGAGACCACAGATGATGGGACCACTAGACGCACGGAGACCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034101-'8-11,'8-10,9-11=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.912 A=0.892 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
ENSMUSP00000042543, ENSMUSP00000064518, ENSMUSP00000065252, ENSMUSP00000107313, ENSMUSP00000107314, ENSMUSP00000107315, ENSMUSP00000107316, ENSMUSP00000107317, ENSMUSP00000107318, ENSMUSP00000107319, ENSMUSP00000107320, ENSMUSP00000107321, ENSMUSP00000107322, ENSMUSP00000107324, ENSMUSP00000107325, ENSMUSP00000107326, ENSMUSP00000107327, ENSMUSP00000141166
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGTTTGAGAAGCTGACCC
R:
TCCTGCATCCTGGGGATAGTG
Band lengths:
178-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types