DreEX6032666 @ danRer10
Exon Skipping
Gene
ENSDARG00000078233 | ctnnd1
Description
catenin (cadherin-associated protein), delta 1 [Source:ZFIN;Acc:ZDB-GENE-110208-9]
Coordinates
chr1:43494933-43501939:+
Coord C1 exon
chr1:43494933-43495084
Coord A exon
chr1:43499925-43499996
Coord C2 exon
chr1:43501814-43501939
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTCTGTTTTCTGCAGAAC
3' ss Score
11.44
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
TGTGTATGGAGCAGTGTGAGAATGCCGCATCTCTCCTGGCCTCCGTGCGAGAGCAAGAGATGCAGTTTGAGCGTCTGACTCGAGCTCTGGAGGAGGAGAGGAGGAGCGTGGGGCCGTCCGGTACCCTACCCCGCCCCCTCCCCACCCTGCAG
Seq A exon
AACGGCCGTATTACTGGTGATGCAGAGTTAGAACGGCTCAAATTGAGTGAGGGATACATAAACGGGACCCAG
Seq C2 exon
TACAGGATGTTGGACCCTGGTCATATTGTTGAGTCGGTCACAGTTGAGTCGGACCCTCATGAGGCGTTGCCTATTATTTCAGTCGAAACTGGTGACGATGGCACCACACGTCGCACCGAGACCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078233-'6-6,'6-5,8-6=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.735 A=0.750 C2=0.956
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGCAGTGTGAGAATGCC
R:
ATGACCAGGGTCCAACATCCT
Band lengths:
171-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]