Special

HsaEX0017870 @ hg38

Exon Skipping

Gene
NA
Description
NA
Coordinates
chr11:57791385-57795729:+
Coord C1 exon
chr11:57791385-57791673
Coord A exon
chr11:57794010-57794081
Coord C2 exon
chr11:57795577-57795729
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCTTGTGGGCTGTGTTTCAGAAC
3' ss Score
8.03
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
TGTGAAGTGAGGGGGTCTCTCTCCCTCCTTCTCCTTCCTCTGTGATTCACCTTCCTTTTTACCCTGCCCTGCGGCGGCTCCGCCCCTTACCTTCATGGACGACTCAGAGGTGGAGTCGACCGCCAGCATCTTGGCCTCTGTGAAGGAACAAGAGGCCCAGTTTGAGAAGCTGACCCGGGCGCTGGAGGAGGAACGGCGCCACGTCTCGGCGCAGCTGGAACGCGTCCGGGTCTCACCACAAGATGCCAACCCACTCATGGCCAACGGCACACTCACCCGCCGGCATCAG
Seq A exon
AACGGCCGGTTTGTGGGCGATGCTGACCTTGAAAGACAGAAATTTTCAGATTTGAAACTCAACGGACCCCAG
Seq C2 exon
GATCACAGTCACCTTCTATATAGCACCATCCCCAGGATGCAGGAGCCGGGGCAGATTGTGGAGACCTACACGGAGGAGGATCCTGAGGGAGCCATGTCTGTAGTCTCTGTGGAGACCTCAGATGATGGGACCACTCGGCGCACAGAGACCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198561-'11-24,'11-21,17-24
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact





	

	
NA





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=NA
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSP00000382004





     
                   









    
Main Skipping Isoform:
ENSP00000434202





     
      









    
Other Inclusion Isoforms:
ENSP00000351527, ENSP00000354785, ENSP00000354823, ENSP00000354907, ENSP00000413586, ENSP00000431600, ENSP00000432041, ENSP00000432243, ENSP00000433276, ENSP00000433334, ENSP00000434808, ENSP00000435379, ENSP00000435494, ENSP00000435789, ENSP00000436323, ENSP00000436543, ENSP00000436744
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


hg19




Conservation


Mouse
(mm10)
chr2:84622011-84622082 
HIGH PSI
MmuEX0013074
(Ctnnd1)
Mouse
(mm9)
chr2:84462168-84462239 
HIGH PSI
MmuEX0013074
(Ctnnd1)
Rat
(rn6)
chr3:72024077-72024148 
HIGH PSI
RnoEX0025207
(Ctnnd1)
Cow
(bosTau6)
chr15:82310536-82310607 
ALTERNATIVE
BtaEX0010336
(CTNND1)
Chicken
(galGal4)
chr5:16255877-16255948 
HIGH PSI
GgaEX1018134
(CTNND1)
Chicken
(galGal3)
chr5:18140537-18140608 
HIGH PSI
GgaEX6037423
(Q5ZJ21_CHICK)
Zebrafish
(danRer10)
chr1:43499925-43499996 
HIGH PSI
DreEX6032666
(ctnnd1)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TCCGGGTCTCACCACAAGATG

				
R: 
TACAGACATGGCTCCCTCAGG

				
Band lengths: 
167-239

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development





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