HsaINT0043020 @ hg19
Intron Retention
Gene
ENSG00000141086 | CTRL
Description
chymotrypsin-like [Source:HGNC Symbol;Acc:2524]
Coordinates
chr16:67963474-67964221:-
Coord C1 exon
chr16:67964088-67964221
Coord A exon
chr16:67963999-67964087
Coord C2 exon
chr16:67963474-67963998
Length
89 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
CCCTCCCTCTTCCCTCTCAGGGT
3' ss Score
12.25
Exon sequences
Seq C1 exon
GCAATGTGACACCAGCACATCTGCAGCAGGTGGCTTTGCCCCTGGTCACTGTGAATCAGTGCCGGCAGTACTGGGGCTCAAGTATCACTGACTCCATGATCTGTGCAGGTGGCGCAGGTGCCTCCTCGTGCCAG
Seq A exon
GTAAGCCCCAGCACCCGCTCCTCTGCGCTGTCCTGTGGTATACCTCCCCAACCCCCCCTACTCAATTCTCCCTCCCTCTTCCCTCTCAG
Seq C2 exon
GGTGACTCCGGAGGCCCTCTTGTCTGCCAGAAGGGAAACACATGGGTGCTTATTGGTATTGTCTCCTGGGGCACCAAAAACTGCAATGTGCGCGCACCTGCTGTGTATACTCGAGTTAGCAAGTTCAGCACCTGGATCAACCAGGTCATAGCCTACAACTGAGCTCACCACAGGCCCTCCCCAGCTCAACCCATTAAAGACCCAGGCCCTGTCCCATCATGCATTCATGTCTGTCTTCCTGGCTCAGGAGAAAGAAGAGGCTGTTGAGGGTCCGACTCCCTACTTGGACTTCTGGCACAGAAGGGGCTGAGTGACTCCTTGAGTAGCAGTGGCTCTTCCTAGAGTAGCCATGCCGAGGCCGGGGCCCCCACCCCTCCTCCAGGGCAACCCCTTGGTCCTACAGCAAGAAGCCAGAACTGTTGGAATGAATGGCAGCCCTCCCTGGAGAGGCAGCCTGTTTACTGAATACAGAGGATACGTTTACAAACTGAATACGCATAATAAATAACTGCACATTCTCCATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141086-CTRL:NM_001907:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(28.2=100),PF067527=E_Pc_C=PD(18.7=44.4)
A:
NA
C2:
PF0008921=Trypsin=PD(20.1=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCATGATCTGTGCAGGTGG
R:
TGATCCAGGTGCTGAACTTGC
Band lengths:
182-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)