HsaINT0043020 @ hg38
Intron Retention
Gene
ENSG00000141086 | CTRL
Description
chymotrypsin like [Source:HGNC Symbol;Acc:HGNC:2524]
Coordinates
chr16:67929570-67930318:-
Coord C1 exon
chr16:67930185-67930318
Coord A exon
chr16:67930096-67930184
Coord C2 exon
chr16:67929570-67930095
Length
89 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
CCCTCCCTCTTCCCTCTCAGGGT
3' ss Score
12.25
Exon sequences
Seq C1 exon
GCAATGTGACACCAGCACATCTGCAGCAGGTGGCTTTGCCCCTGGTCACTGTGAATCAGTGCCGGCAGTACTGGGGCTCAAGTATCACTGACTCCATGATCTGTGCAGGTGGCGCAGGTGCCTCCTCGTGCCAG
Seq A exon
GTAAGCCCCAGCACCCGCTCCTCTGCGCTGTCCTGTGGTATACCTCCCCAACCCCCCCTACTCAATTCTCCCTCCCTCTTCCCTCTCAG
Seq C2 exon
GGTGACTCCGGAGGCCCTCTTGTCTGCCAGAAGGGAAACACATGGGTGCTTATTGGTATTGTCTCCTGGGGCACCAAAAACTGCAATGTGCGCGCACCTGCTGTGTATACTCGAGTTAGCAAGTTCAGCACCTGGATCAACCAGGTCATAGCCTACAACTGAGCTCACCACAGGCCCTCCCCAGCTCAACCCATTAAAGACCCAGGCCCTGTCCCATCATGCATTCATGTCTGTCTTCCTGGCTCAGGAGAAAGAAGAGGCTGTTGAGGGTCCGACTCCCTACTTGGACTTCTGGCACAGAAGGGGCTGAGTGACTCCTTGAGTAGCAGTGGCTCTTCCTAGAGTAGCCATGCCGAGGCCGGGGCCCCCACCCCTCCTCCAGGGCAACCCCTTGGTCCTACAGCAAGAAGCCAGAACTGTTGGAATGAATGGCAGCCCTCCCTGGAGAGGCAGCCTGTTTACTGAATACAGAGGATACGTTTACAAACTGAATACGCATAATAAATAACTGCACATTCTCCATCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141086:ENST00000574481:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(28.2=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.1=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCATGATCTGTGCAGGTGG
R:
TGATCCAGGTGCTGAACTTGC
Band lengths:
182-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development