RnoINT0043267 @ rn6
Intron Retention
Gene
ENSRNOG00000019353 | Ctrl
Description
chymotrypsin-like [Source:RGD Symbol;Acc:621501]
Coordinates
chr19:37905864-37906242:-
Coord C1 exon
chr19:37906109-37906242
Coord A exon
chr19:37906026-37906108
Coord C2 exon
chr19:37905864-37906025
Length
83 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
CCCCTTTGCTTCCCTTTCAGGGT
3' ss Score
12.32
Exon sequences
Seq C1 exon
GCAACGTGACACCAGCACGTCTGCAGCAAGTAGTTCTACCCCTGGTCACTGTGAATCAGTGTCGGCAGTATTGGGGTTCACGCATTACTGACTCCATGATATGTGCAGGTGGCGCAGGTGCCTCCTCATGTCAG
Seq A exon
GTAAGCGCCTTGTCTTCTGCACTGTCCCGTGGTACACTTCCCCAAACTGCCATGCTGACTTTTCCCCTTTGCTTCCCTTTCAG
Seq C2 exon
GGTGACTCAGGAGGCCCTCTTGTCTGCCAGAAGGGAAACACCTGGGTGCTTATTGGTATTGTCTCCTGGGGCACTGAGAACTGCAATGTACAAGCACCGGCCATGTACACTCGGGTCAGCAAGTTCAACACCTGGATCAACCAAGTCATGGCCTACAACTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019353:ENSRNOT00000026361:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.6=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.1=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCTGGTCACTGTGAATCA
R:
TGCCCCAGGAGACAATACCAA
Band lengths:
170-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]