HsaINT0044232 @ hg19
Intron Retention
Gene
ENSG00000197408 | CYP2B6
Description
cytochrome P450, family 2, subfamily B, polypeptide 6 [Source:HGNC Symbol;Acc:2615]
Coordinates
chr19:41515124-41516040:+
Coord C1 exon
chr19:41515124-41515300
Coord A exon
chr19:41515301-41515898
Coord C2 exon
chr19:41515899-41516040
Length
598 bp
Sequences
Splice sites
5' ss Seq
AAAGTGGGG
5' ss Score
-1.01
3' ss Seq
CTTCCCTACTGTGGACGCAGGAG
3' ss Score
5.73
Exon sequences
Seq C1 exon
CTGTTTGAGCTCTTCTCTGGCTTCTTGAAATACTTTCCTGGGGCACACAGGCAAGTTTACAAAAACCTGCAGGAAATCAATGCTTACATTGGCCACAGTGTGGAGAAGCACCGTGAAACCCTGGACCCCAGCGCCCCCAAGGACCTCATCGACACCTACCTGCTCCACATGGAAAAA
Seq A exon
GTGGGGTCTGGGAGAGGAAAAAGGGAAGGGAGGGGAGGGAGGGCAAGATGGAGAGGTGAGAAGAGGGAGGGAAAAGGGGTAGGGAAGGGGAAGATGGGGAGGGAAGAAGAAAGACTAGGGAGGGGAGAATAGGGAAAGGGAGGAGAGAACATGAGGAAGGAAAGAAAGATGAGGTGAAAGGAGGGAGAAAATAGGGAGGAGGAACTGAGACAGGGAGAGAGGGGAGGTGGGAAGACAGAATGAAAGACAGAGGGAGAGAGAGAGAAGACTGGCTGAGGAAGGAATTCGGGGCAAGGGACAAAAATACAGCAACAAGAGAAAAAACTCACAGAGGCAGAAAGAGACGGGGACAAAAAGAGAGAAACACATCAAAGAGATGTGGAGAGAGATAGAAACAGAGTTAGGAAGACTAAAGAGAGGCTGAGAGAGATGAGTTAGAGATACGCGGTTGGATGTGTAGAGGACAGAGAAAAGCAAACTGGGCCAGATAGTGTCAAAGACCTTTAGGCCAACGGAGGGCAGCCAGGGAGATGGGCGTATACACAGCAAGGCTACAGCCTCCCCTGACCCTCCCCTTCCTTCCCTACTGTGGACGCAG
Seq C2 exon
GAGAAATCCAACGCACACAGTGAATTCAGCCACCAGAACCTCAACCTCAACACGCTCTCGCTCTTCTTTGCTGGCACTGAGACCACCAGCACCACTCTCCGCTACGGCTTCCTGCTCATGCTCAAATACCCTCATGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197408-CYP2B6:NM_000767:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.7=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTTGAGCTCTTCTCTGGCT
R:
TGCAACATGAGGGTATTTGAGCA
Band lengths:
318-916
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)