MmuINT1008048 @ mm10
Intron Retention
Gene
ENSMUSG00000066704 | Cyp2b19
Description
cytochrome P450, family 2, subfamily b, polypeptide 19 [Source:MGI Symbol;Acc:MGI:107303]
Coordinates
chr7:26763343-26764391:+
Coord C1 exon
chr7:26763343-26763519
Coord A exon
chr7:26763520-26764249
Coord C2 exon
chr7:26764250-26764391
Length
730 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
TCTCTCCCATCTGGAACCAGGAG
3' ss Score
7.31
Exon sequences
Seq C1 exon
GTGTTTGAGCTCTTCTCTGCCATCCTGAAGTACTTTCCTGGTGCCCACAGACAAATCTCCAAAAACCTGCAGGAAATCCTTGACTACATTGGCCATAGTGTGGAGAAGCACAGGGCCACCTTGGACCCCAGTGCTCCACGAGACTTCATTGATACCTACCTTCTGCGCATGGAGAAG
Seq A exon
GTTAGTCCTGCATGGATGAGAGATGGGGTGGGTGAAAGTGAAGGATGGGGATGTTGTCAGAGAAAAAGATGGGAGGGGACAGAGGATGGTGAGGAGAGGAAGAAACAGAGTGGAGGAGATGCAGAACATCTGGGAGAAAAGAGAAAGGGAGGAGAAAGTGACATAGGGAAAGAGAAGGGGTGTGGCCGGGGATGAAACACGGGGCAAAGAATGAAAAGCAGACAAGACCACAGAGTCTGGAGAGAAGGCTCATGTTAGAAACCCTGTCTGCTATGGCAGATGACTGGAGTTCCTTTCCCAAAACCTATGTTGGGCTGCTCATAATCATATGTAACTCCACCTCTATGGACTCCAATGCTGTCTCCTAGCTTTTCTGACAAACAGACACATAAACACACAGAGCCACAGACAGATAAACGCACACAAATACAAACACACAGATACACACTCACACACATACACACACACTCCAGACACCCACAGTCACATACACATAAATACACATAAAATAAGAGACAGAGAAGTGAGATTCTAAAGAGCAAAGGAGTCGAGTGAAGACTGAATGAAAGAGGCTAAGAGCCAATGAGACAGGTGTGAACTGCTGAGGGGACACATGCCCAGTGGTCCAGATAGTGTGAGACACACGCACAGTGACTAGAAAGGCTCATGTTTCTCACTGCAAGGGCTCAGCCACCCCTGATCATCCCTTCTCTCTCCCATCTGGAACCAG
Seq C2 exon
GAGAAGTCCAACCACCATACAGAGTTCCATCACCAGAACCTCGTGATCTCTGTGCTCTCTCTGTTCTTTGCTGGCACCGAGACCACCAGCACCACGCTCCGTTACAGCTTCCTGATCATGCTCAAGTACCCCCATGTCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066704:ENSMUST00000077855:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.7=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTTGAGCTCTTCTCTGCCA
R:
TGCGACATGGGGGTACTTGAG
Band lengths:
318-1048
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types