HsaINT0044457 @ hg38
Intron Retention
Gene
ENSG00000171903 | CYP4F11
Description
cytochrome P450 family 4 subfamily F member 11 [Source:HGNC Symbol;Acc:HGNC:13265]
Coordinates
chr19:15927430-15929601:-
Coord C1 exon
chr19:15929457-15929601
Coord A exon
chr19:15927484-15929456
Coord C2 exon
chr19:15927430-15927483
Length
1973 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
ATGGTCCTCAATCATGTCAGCTG
3' ss Score
4.43
Exon sequences
Seq C1 exon
GTCACTCCCACGGAAGAGGGCATGAAGACATTGACCCAGCTGGTGACCACATATCCCCAGGGCTTTAAGTTGTGGCTGGGTCCTACCTTCCCCCTCCTCATTTTATGCCACCCTGACATTATCCGGCCTATCACCAGTGCCTCAG
Seq A exon
GTACCCGTGCAGAGCTTGTGGTAGTGGGGGCTGGGAAACATCAAAGGCCTTCTAGCCTCTCCCCTCCCCAAGCTTCTGTGTGGCCCCTGCAGGGCCCAGGCCCCTCTTCCTGCTTCTCTCTCAGCCATGTTCCTCTTTCCTTCATGTATTCACGAACCCCCCATGTCAGCGTCTCCTCCCTCCACTGCCATCTCTCTCTGCCTTTGTGTTCTGGGCACCACTGGGGCTCCAAAAAGCCTCAATTTAGGGCCCTGTCCTCGAGAAAGCCCCGTGCTTGAGGAAATGGATCTGGACAGAGACATCTCAAACTTCGTGGAGTCAGGAATTGGCAAGAAGGAGATGGGTGTGACAACTGGGAGAACAAGGTCTTTCCTGGGGGCAGATTGGAAGGCTTCCTGGAGGAGGAGTTGCTGGAAAAATGAGTAAAAAGATTTTAAAGCAAGGGGAAGGGTGATGCAGTGGACATCATTAGTATACAGGTACCGCTGCCAGGCCTGGCATCAGCCTTGTCTGTCCCTAAGCCTATGGTACTAGGGGGATTTGAGGCTGGTGGAGAATCTGGGCTGCTATTTATGTGATGTTCAAGTCTGGTGAGTTTATTCCTTTTACCTCATCCTGTCACTCATCCACCCTATTCATGGCTCTCCTGCTCCAGGCCCCAGCAATCTCCAGTAGGAGATCCCACCCCAGTCTGGGGCCCTTTCTTTACCTCTGCTCATCCTGTGCTTGAACAGGCCAGACTAAGCAGGGGCAGGGGAAGCATCCCACAGAAACTATGGCTATAACCTCAGGATGCTGAGTGACTCTGGGCAGGTCCTCAGCTCTCTCTGGCTGCTGAAGTCTCTTTCAGTTGCGAGTGATGGAAACTCAGACTCATGTGGTCTAAGCAAATAAAGAGAATCAATGTGCTGTAAGTCTGGGGAGAGTGGTCTTCAGGCATGGTTGGATCCAGGTGTCAATTAATCCACATCACTGGGAATCTGTCTCCTTCTCTCGATTTTACCATTCTCTGTGTCACTTTGCCTTTTCATATGGTGTCAACGATGAGTCTCAGAAGCCCAGTTCCAATCAGAAAGCCCACCTTTCTTCCAAGGGTCCCATATATAGCCTATGTTTTCTACATTATATTTGATTGTATCTGGTATATGCTTCCACCTGGGATCATATACAGAAGTCATCATGTGTGGGGCTCAGTTGTGGCTGAGGACATTTGGGGCATGTCAGAGTCTTTTTGGTTCTTGTCTGAGATGTAGTGTGAGATTGTCTTTTTATTCTACTTCAAATGTCTTGGCCATGTTTGGTGCTTGTCCAAGGTGTAGGACCCAGGGAATCTTTGAGAACTGTCTGAGATATTATTTGAGTCTTAGTATAGTTAGGTCTTAGGGTAGATTTGAATTATGCCGAAGAATAGGCTTGGTTATACCCGGGCCATGTTTAGGACATTAGTGACATCATATTTAAATGTTATCTAGGACCCTTCACTGGGATACACAGAAGTCATATCAGACCATCTCAGGTCCATGGCAGAGCATGTTGTGTCATTTAGGGTTTGTCATATGTGTTTTGGCCATGTCAGGGAATGTTAACAACTGTCGGGGCAATATTCCAGGTCCCAGATCCATGTCAGAAGATAGCAGAGAGTGCTGGGAGTAGACAGAGTGTCCTAGGTCCCTGTAAAGGCATTCTGTAGAGTGTTGAGCTATGCTCAGGTGTTGCAGAACATGTTGGACCTTGTAGGAGATATGTCACTGTGTGCTGGGGCATGCTGTGTTATTGCTCTACTCTGTCGCTGCAGCCTGGTCTGGTCTCTCCTTCCTCCACCATCCTCCCTTCTTCCTCTACCCTTGGCCTTCTTCCTGCTATGCTGGGTGGGATGCGTGGAAGTGCACACCCCTGGCTGGGAGCATTCCTCCATACCCAAAGTCCTTCTCTCACCCCTCTCCATGGCCACTGATGGTCCTCAATCATGTCAG
Seq C2 exon
CTGCTGTCGCACCCAAGGATATGATTTTCTATGGCTTCCTGAAGCCCTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171903:ENST00000402119:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(3.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGGAAGAGGGCATGAAGA
R:
CTTCAGGAAGCCATAGAAAATCAT
Band lengths:
182-2155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development