HsaINT0044469 @ hg38
Intron Retention
Gene
ENSG00000186204 | CYP4F12
Description
cytochrome P450 family 4 subfamily F member 12 [Source:HGNC Symbol;Acc:HGNC:18857]
Coordinates
chr19:15678261-15680297:+
Coord C1 exon
chr19:15678261-15678405
Coord A exon
chr19:15678406-15680243
Coord C2 exon
chr19:15680244-15680297
Length
1838 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
ATGGTCCTCGTTCATGTCAGCTG
3' ss Score
5.96
Exon sequences
Seq C1 exon
ATCACTCCTACAGAGGAGGGCTTGAAGAACTCGACCCAGATGTCGGCCACCTATTCCCAGGGCTTTACGGTATGGCTGGGTCCCATCATCCCCTTCATCGTTTTATGCCACCCTGACACCATCCGGTCTATCACCAATGCCTCAG
Seq A exon
GTACCCATGCAGAGCTTGTGGTGGTGGGTGCCAGACCAAGCTTCTGTGTGGTCTCTGCAGTACCCACGTCCCTCCTTGAGTACTCGTGCCCCTCATTGAGACTTCCTTCTCAATGTCTTCTCCCTCCATTGCCATCTGCTCCCTGTCTTGGTGTTCTGGGCACCACTGGGGCTCCAAGAGGCCTCAATTCAGGGCCCTTTCTGGAAGGAACCCCCATGCTTAAGGACACGGGTCTAGACAGAGACATTTCCAGCCTCATAGGGTCAGGAATGGGCAAGAGAGAGATGGGTATGACAACACAGAGAACTGGGTGTCTGCTGGGGCAGGCTGGAATGTTTCCTGGAGGAAGAGTTGTTGGAGCTATGTCTAGACCAATAAGTAGGATTTTTTAAGTGTGGGGCAGGATGATGCAGTGGGCATCATTGGTATTTGGGGTCCCAGCCAGTCCTTGCACCAGCCTTGCCCATCCCTCAGTCCAAAGCGGTAGGAGGATTTGTGGCTGGTGGAGAATCTGGGCTGCTATTTATGTGACATCCACCTATGATGGGTCAGTTCCTTCTACCTCATCCTATCACTCATCCACCCTAAGTTTCCTGCTCTCCTCCTATGGGCTTCAGGATTCTCCAATAGGAGAACCCACACCAGCTGCTTGACCTCCCCTTGCTCTCTGCTCTTCTCATCCTTGGACACACCAGGCTGAGCTAGGGAAGTGGCAGCATCCCACAAAATCTATGGCTCTGACCCCCAAATCCTTAGTGACTCTGTGCAGGTCACCAGCTCTCTGGCTGCTGAGGTCTCTTTCAGTTGTGAGTGATGGAAACTCAACTTCGTGTGCTCTAAGCAAATAAAGAGAGTCAAAGGAGTGTAAATTTCAGGGAGGGTGGTCTTCAGGCATGGCTGAATCCAGGTGTCAATGAACATTATCAGGGATCTGTCTCCTTTTCTTAATTTCACCATTTCTCTGCATCACTTTTTCTTTTAAGGCAGCCGTTCTCTTATCTGTCAACCATGGGTCCTAGCAGCTCAGTTCTTGTCCGAAAGCTCACCTTACCCCCAGGGGTCCCATAAATAGCCGCCTATAGTTTCAATATTATACCTGGTTATATCTTTTCTGTTTAACCTGGGATCATATGGAGAAGTCATCATGTGTGTGGCTCAGCTGTGGTCGAGGACACTTGGGGCATGTCAGAGACTTTCTGGTTCTTCTCTGACATGTGATTTGAAATTGTCTTTTCTCCTCCTTGTCATCTCTTGGCCATGTTTGTAGCTTGTCCAAGGTCTGGGAGCTAGGGTCTCTTTGGAATTGTCAGAGTTATTATTTTAGTCTCCCTGAGCCAGGTTTCGGAATCCATTCTAATCACGCTTGAAGAAAACTCTTGGTTCCACCTGGGACATGTCTGGGACATTTAAGAAATCACATTTAAACCCTATCTGGGGCCTGTCTGTGGGGTACACAGAGGTCATGTCAGACTATCTCAGGTCCATGTCAGGAGATGACAGAGAGTGCTATGGCAGACAGGGTGTCCGAGGTCCTTTAAAGGTATTTTGTAGAGTGTGGAGCTGTGTTCAGTTGTTGCAGAACATGTTGGGATATATAGGAGCCATGTCAAGGCGTGCTGGGGTGTGCTATGACCTGTTAGGTTGTGTCATAGCTTTACTGTGCTGTTGCAGCCTGGGCTGGTCCTTCTTCCTCTATCCTCCCTTCGTCCTTTGCCCTTGGCCCCCTTCCTGCTATGCTGGGCATGGAGTGGGGAAAGTGCTGGTAGGCAGCCTTGCCCTATACCTGAAGTTCCTCTCTTGCCCTCTACATGGCCCCTGATGGTCCTCGTTCATGTCAG
Seq C2 exon
CTGCCATTGCACCCAAGGATAATCTCTTCATCAGGTTCCTGAAGCCCTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186204:ENST00000550308:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(14.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGGCTTGAAGAACTCGA
R:
GCCAGGGCTTCAGGAACCT
Band lengths:
183-2021
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development