HsaINT0044496 @ hg19
Intron Retention
Gene
ENSG00000171954 | CYP4F22
Description
cytochrome P450, family 4, subfamily F, polypeptide 22 [Source:HGNC Symbol;Acc:26820]
Coordinates
chr19:15648172-15648473:+
Coord C1 exon
chr19:15648172-15648225
Coord A exon
chr19:15648226-15648345
Coord C2 exon
chr19:15648346-15648473
Length
120 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
CCTCAGTCTTCTGGGCCCAGGGG
3' ss Score
3.75
Exon sequences
Seq C1 exon
CTGCCATCGCCCCCAAGGATGACCTCTTCTATGGCTTCCTAAAACCTTGGCTAG
Seq A exon
GTGAGTGCCCAGTGGGTAGGCTGGGGCTGGGGCTTTAGAGAAGAGAGGGAAGAGCATGGGGTTCCTTGGAAGGTTTCAGAGTAACAGGAGAGGTCCCTAACCTCAGTCTTCTGGGCCCAG
Seq C2 exon
GGGATGGGCTGCTGCTCAGCAAAGGTGACAAGTGGAGCCGGCACCGTCGCCTGCTGACACCCGCCTTCCACTTTGACATCCTGAAGCCTTACATGAAGATCTTCAACCAGAGCGCTGACATTATGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171954-CYP4F22:NM_173483:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(3.9=100)
A:
NA
C2:
PF0006717=p450=FE(9.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCGCCCCCAAGGATGA
R:
TGCATAATGTCAGCGCTCTGG
Band lengths:
178-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)