RnoINT0044583 @ rn6
Intron Retention
Gene
ENSRNOG00000029478 | Cyp4f39
Description
cytochrome P450, family 4, subfamily f, polypeptide 39 [Source:RGD Symbol;Acc:1308796]
Coordinates
chr7:14498038-14498844:+
Coord C1 exon
chr7:14498038-14498091
Coord A exon
chr7:14498092-14498716
Coord C2 exon
chr7:14498717-14498844
Length
625 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
TCTTGGTTTTCTGGGTCCAGGGG
3' ss Score
6.21
Exon sequences
Seq C1 exon
CTGCCATTGCGCCCAAGGATGAGTTTTTCTATAGCTTCCTGAAACCTTGGTTAG
Seq A exon
GTAAGTGCTGAAGGGGGGCGGGAGGATGGAGTTTCGGGTGTGGGAAACAAGGATCCTTGCTTCATAAGAGTACTGGAGACTCAGAGTAGGGAAAGTAAGTCAGTTTGCCTTACAATGTAACACAGAGTTGAGCGTTAGCCTAGAGAAAAGGATAATGGCTGCCCATCCCCCAATCTGATCCCAAACTGGCTTTTATAGTTCTGATATCTCTCTGCCCCATGGATTTCCCATTAGGCGAGTTCTTCAGGGAGTGTCCTTATCCCTTGGCGTCTAGCATTGTCCTCTCCCCAGATTCCTATCCCAGTAAAGACAAAAGCCCTGCTTGGTGTGTATCTTGGGGCTGGAGATTCCCTTCATTTCTAGTACATGGCCTTAGACTTCCTAAAACCTTTCAATCTCAGGATGAACTGAGATCACATAAAGCAGGCACCAGCGGGCAGTTGGGGGAAGATGGGCCCAGTGCCTCCTTTGTGGTTTTCCAATGGGCTCGAAGCACAGCTCATACTGAAACCGGATGGAGCCTTACGGATCGATTATCCTCTGCGCAGGGAATGAGGGAAGGGCGTGGGCTTCCTGGGAGGGCTTCAACAGGGATAGGCTTCTAGTCTTGGTTTTCTGGGTCCAG
Seq C2 exon
GGGATGGGCTTTTGATCAGCAAAGGGAACAAATGGAGCCGGCACCGCCGTCTGCTCACGCCTGCCTTCCACTTTGACATCCTGAAGCCCTACATGAAGATTTTCAACCAGAGCGTGAACATCATGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029478:ENSRNOT00000007548:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(3.9=100)
A:
NA
C2:
PF0006717=p450=FE(9.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCATTGCGCCCAAGG
R:
GTGCATGATGTTCACGCTCTG
Band lengths:
182-807
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]