MmuINT0045437 @ mm9
Intron Retention
Gene
ENSMUSG00000061126 | Cyp4f39
Description
cytochrome P450, family 4, subfamily f, polypeptide 39 [Source:MGI Symbol;Acc:MGI:2445210]
Coordinates
chr17:32618019-32618852:+
Coord C1 exon
chr17:32618019-32618072
Coord A exon
chr17:32618073-32618724
Coord C2 exon
chr17:32618725-32618852
Length
652 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
CCTTGTTTTCCTGTGTTCAGGGG
3' ss Score
9.44
Exon sequences
Seq C1 exon
CTGCCATTGCACCCAAGGATGAGTTTTTCTATAGCTTCCTGAAGCCTTGGTTAG
Seq A exon
GTAAGTCCTGAAGGGGACGATGGAGCTGGAGTTTTGGGTGTGCGACATCATAACAAGAGTACTGGGGACTCAGAGTAGGGAAAGTAAGTCAGTCTATCTTACAGTGCAACACAGAATTGAATGTTGGCCTAGAGAAAAGGCAAATGGCTGCCCATCCCCCAGTTTGATCCCAAACTGGCTTTTATATTTTTAATATTTCTCTGCCCCTTGGATTTCTCATTAGATGAGTTCTTCAAGGAGGTCCTTAGCCTTCTGGTGTCTAGCATTGTCCCCTCCCAGATTCCTATCCCAGTAGTTCAAGTCCAAAGCCCCATCTGGTGTGTATCTTGGGGCTGAAGATGTCTGATCCATGGGCTTGGACTTCCTATAACCTTTCAATCTTAGGATGACCTGAGATCACAGAAAGCAGGCACCAGTTGGCAGCTGGGGAAGATGGGGCCAGTGCCTCCTCTTGTGATTCTCCAATGGGCTCTAAGCACACCTCATAGTGAAACAGGAGCCATACTGATTATCTTTAACACAGGGAATTAGGGAAGGGTGTGAGCTCCCTGGAGAGCTTCATCGGGGTGGGGTGGGGAGCAGGCTTCAGCGGGGGTGGGGGGGGGGAGGCTCCAGCGGGGGCAGGCTTCTAGCCTTGTTTTCCTGTGTTCAG
Seq C2 exon
GGGATGGACTTCTGATCAGCAAAGGGAACAAATGGAGCCGGCACCGCCGCCTGCTCACACCTGCCTTCCACTTTGACATCCTGAAGCCCTACATGAAGATTTTCAACCAGTGCACGAACATCATGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061126-Cyp4f39:NM_177307:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(3.9=100)
A:
NA
C2:
PF0006717=p450=FE(9.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: