HsaINT0044507 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr19:15880395-15880789:-
Coord C1 exon
chr19:15880723-15880789
Coord A exon
chr19:15880525-15880722
Coord C2 exon
chr19:15880395-15880524
Length
198 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCTGCCTGCTTCCCCTTCAGGCC
3' ss Score
11.63
Exon sequences
Seq C1 exon
GATGAAGATGGGAAGGTGTTGTCAGATGAGGATGTAAGAGCAGAGGCTGACACCTTCATGTTTGCAG
Seq A exon
GTGAGGCTGCCAGTGTGGGACTACAGTGAGGACAGGGGTCCTTTCATCTCAGGAACATGGTGGGTGGGCCCTGGATCACTCAATTCTGCCTATCTTCCCCCTCCCTCCATCCTCCCTGAGGGCCTCAATGCATGGACGCTGTCCACCCTCTGGTGCTGAAGCAGCCCAGAGACCCAAGCCTGCCTGCTTCCCCTTCAG
Seq C2 exon
GCCATGACACCACAGCCAGTGGTCTCTCCTGGGTCCTGTACAACCTCGCGAGGCACCCAGAATACCAGGAGCACTGCCGGCAGGAGGTGCAAGAGCTTCTGAAGGACCGCGATCCTAAAGAGATTGAATG
VastDB Features
Vast-tools module Information
Secondary ID
-CYP4F24P:NR_033864:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAAGATGGGAAGGTGTTGTCA
R:
TCAATCTCTTTAGGATCGCGGT
Band lengths:
194-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)