HsaINT0046147 @ hg19
Intron Retention
Gene
ENSG00000125485 | DDX31
Description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:HGNC Symbol;Acc:16715]
Coordinates
chr9:135523576-135523938:-
Coord C1 exon
chr9:135523819-135523938
Coord A exon
chr9:135523683-135523818
Coord C2 exon
chr9:135523576-135523682
Length
136 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTTTTTTTTTACAATCACAGAAT
3' ss Score
7.38
Exon sequences
Seq C1 exon
ACTCCGCAAAGGAATAAATATCCTTATCTCAACTCCTGGACGCCTGGTGGATCATATAAAATCCACAAAGAACATTCATTTTAGTCGGCTGCGGTGGTTGGTGTTTGATGAAGCAGACAG
Seq A exon
GTGAGCCTCGTCCCAGGATGATAACAGGTAGAAGAGAAGGGCTGTTTCTCCTCTCCTTGTTGCAACTTCTGTAGCCCCTTAGACCACATCTGCTCTTCATATAGTTGAAAATTTCTTTTTTTTTTTACAATCACAG
Seq C2 exon
AATCTTGGATTTGGGTTTTGAAAAGGACATCACAGTGATACTTAATGCTGTAAATGCTGAATGCCAAAAACGACAGAATGTCTTGCTATCAGCGACACTCACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125485-DDX31:NM_022779:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0027024=DEAD=FE(22.5=100)
A:
NA
C2:
PF0027024=DEAD=FE(20.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCAAAGGAATAAATATCCTTATCT
R:
CTGTGAGTGTCGCTGATAGCA
Band lengths:
221-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)