MmuINT0047704 @ mm9
Intron Retention
Gene
ENSMUSG00000026806 | Ddx31
Description
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31 [Source:MGI Symbol;Acc:MGI:2682639]
Coordinates
chr2:28714256-28714614:+
Coord C1 exon
chr2:28714256-28714375
Coord A exon
chr2:28714376-28714507
Coord C2 exon
chr2:28714508-28714614
Length
132 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCCTTCTCTTAAACTTTCAGGAT
3' ss Score
10.7
Exon sequences
Seq C1 exon
ACTCCGAAAAGGCATAAATATCCTTATCTCCACTCCTGGCCGTCTAGTGGATCATATAAAATCCACAAAGAACCTTCACTTTAACCGAATACGGTGGCTGATTGTGGATGAAGCAGACAG
Seq A exon
GTGAGCTTAGTCTAGGAAGCAGGGAAAGTGGAAAGGGGACTGTTTGTCCTGCCATCTCCAGGACAGACCTGTGGCCTGGTAGTATCAGATTTCCTCTTTGCACCGGGCAAAGTCCTTCTCTTAAACTTTCAG
Seq C2 exon
GATCTTGGATTTGGGTTTTGAGAAGGACATCACAGTGATTCTGAATGCTGTCAATGCTGAGTGTCAGAAACGGCAGAATGTCCTCCTGTCAGCGACACTCACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026806-Ddx31:NM_001033294:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0027024=DEAD=FE(22.5=100)
A:
NA
C2:
PF0027024=DEAD=FE(20.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCGAAAAGGCATAAATATCCT
R:
CTTCTGTGAGTGTCGCTGACA
Band lengths:
227-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: