RnoINT0045993 @ rn6
Intron Retention
Gene
ENSRNOG00000013040 | Ddx31
Description
DEAD-box helicase 31 [Source:RGD Symbol;Acc:1304895]
Coordinates
chr3:7441771-7442129:+
Coord C1 exon
chr3:7441771-7441890
Coord A exon
chr3:7441891-7442022
Coord C2 exon
chr3:7442023-7442129
Length
132 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCCTTTTCTTACATCTTCAGGAT
3' ss Score
11.1
Exon sequences
Seq C1 exon
ACTCCGCAAAGGCATAAATATCCTTATCTCAACTCCTGGCCGGTTAGTGGATCATATAAAATCCACAAAGAACATTCACTTTAACCGAGTACGGTGGCTGGTTGTGGATGAAGCAGACAG
Seq A exon
GTGAGCCTCGTCTAGGAAGCAGGGAAAGTTGAAAGGGGGCTGTTTGTCCAACCATCTCCAGGACAAATCTGTGGCCTAGTAGTGTCAGATTTCCTCTTTGCATGGGGTCAAGTCCTTTTCTTACATCTTCAG
Seq C2 exon
GATCTTGGATTTGGGCTTTGAGAAGGATGTCACCGTGATTCTGAATGCTGTAAATGCTGAGTGTCAGAAGCGGCAGAATGTCCTCCTGTCAGCGACACTCACGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013040:ENSRNOT00000064323:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0027024=DEAD=FE(22.5=100)
A:
NA
C2:
PF0027024=DEAD=FE(20.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCGCAAAGGCATAAATATCCT
R:
CTTCCGTGAGTGTCGCTGAC
Band lengths:
227-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]