HsaINT0046781 @ hg38
Intron Retention
Gene
ENSG00000162777 | DENND2D
Description
DENN domain containing 2D [Source:HGNC Symbol;Acc:HGNC:26192]
Coordinates
chr1:111188702-111189253:-
Coord C1 exon
chr1:111189212-111189253
Coord A exon
chr1:111188787-111189211
Coord C2 exon
chr1:111188702-111188786
Length
425 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
3' ss Seq
GGAGCTCTGTCCTCTTCTAGGTT
3' ss Score
9.01
Exon sequences
Seq C1 exon
GTCCTGCTGGTCAATCTTTGTGAAGGAACCTTCTTAATGTCG
Seq A exon
GTAAGTGTCTGGGTTCAGATCCCCTGCAGGCCTATCAACAACTCTACCACTCTAGTTTCATCCATGTTCCACTTATTTAAACAAACATTTAAGTTCTTTGTTGAGTGAGAATCTGTGCTAAAAAGACCACATCTCTCTCAAGGAGCCCATGGACATAAACACAGATGACTTCACTATAAGACAATCAGTGATAGTGCCTTTTAAGCAAGGGATATAAATCAAGTACCACCGGGATGGAGAGGATCCCTTGCTAATGTCTAGAGTCAAACTAAAGGCCAAGAAACAGCTTCTGTTGTTTCTGTCCTATGTGGCTATTTGCGGGTGGAGTGGGGGTGTAGAATTCATGCCCTCCTTATGCTTTTCTGCCAACCACCTTCACTCCACACTTCCTTCCTGCTTGACCTCGGAGCTCTGTCCTCTTCTAG
Seq C2 exon
GTTGGTGATGAAAAAGACATCCTGCCACCGAAGCTTCAGGATGACATCTTAGACTCTCTTGGTCAGGGGATCAATGAGTTAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162777:ENST00000369752:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=PD(4.3=57.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development