GgaINT0141478 @ galGal3
Intron Retention
Gene
ENSGALG00000000154 | DENND2D
Description
NA
Coordinates
chr26:1018659-1019190:+
Coord C1 exon
chr26:1018659-1018700
Coord A exon
chr26:1018701-1019099
Coord C2 exon
chr26:1019100-1019190
Length
399 bp
Sequences
Splice sites
5' ss Seq
GCGGTAGGT
5' ss Score
9
3' ss Seq
TGGCCCCATTTGCCTTCCAGGTG
3' ss Score
10.62
Exon sequences
Seq C1 exon
GCTCTGATAGTTGATCTGTGTGAAGGGAAGATCCTCCGGGCG
Seq A exon
GTAGGTTCCCCACGCAGGACATGGGGCTGAGGGTCCTCACTTTGTCCCAGCTGCGTCTCGGTGGCAGGGCTGTGGGGTCACCATCTCTGGATGGGTTCAGAATGGTGGAGATGTGGCACTGAGGGATGTAGGTGGGCACGGTGGGGTTGGGCTGGAATCAGGGATCTCAGAGTCCTTTTCTGACTTAGAATCGTCAGATCTTTAATGTCCTTGTGCCCCACAAAGTGATTCCTCCACCCGCTGTGCTGCCCTACGAGCAGCAACCTCTGTCTCTGGGGCATCCCATTGCCAGCATCCCTTCACACCATCATTACAGGGCCCCATAGAGCCCCTGAGCACCTCCCGGGGCCACACGAGCTGCATTCCCATTGGTCCTTCATGGCCCCATTTGCCTTCCAG
Seq C2 exon
GTGGGCGACGAGGATCAGATCTTGCCCATCAAGCTGCAGAACGAGATGCTGGCATCTCTGAACAGGCACAACAGCAACAACAACATCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000154:ENSGALT00000000210:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF0214116=DENN=PD(4.3=57.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]