RnoINT0144174 @ rn6
Intron Retention
Gene
ENSRNOG00000013934 | St5
Description
suppression of tumorigenicity 5 [Source:RGD Symbol;Acc:1308995]
Coordinates
chr1:174139375-174140409:-
Coord C1 exon
chr1:174140368-174140409
Coord A exon
chr1:174139487-174140367
Coord C2 exon
chr1:174139375-174139486
Length
881 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GCTGTCTTTTCCTTCTGCAGATG
3' ss Score
12.26
Exon sequences
Seq C1 exon
GCACTGATGGTGAATCTAGGATCTGACCGATTCATCCGACAG
Seq A exon
GTAAGAGCAGCATATACAAAACCTGGGCTGCCCCAGGGAAGGCACTGGGCACTCAGTCACCACCCAGCCTGATTTGTGAGCTCTGAATTTCAAACTCACAGAACAGACAGGGGTAGTGGAGAAAGTTGATTTCAGAACCCATAACCTCAATGGGATCTGCCTTTCTAGTTTTTGTCCTTGGTTTCACCTTGGTATAGGGTCTCACTGTCTAGCTCTGGCTGACCTGGAACCTGTGACAGTTCTCTGGGTGCTGGGAAAGCACAAGTTCTAAAACAGAAAATGGACCTCAGAATTTCTCTGAGCCACTACTTTCATCAGATAACACCTCTCTAGAGATGTTCTGGGGATTGTAAACACCACTGAAATGTGCTTTGTAAAGGTTTACAGTCATTGCTACAAAAAGCCTTCGTTAGTCATGGAATCTTCTTGGCTTCTCATAAAGGAGCATAACCTAGCATATCCCCTTTGGGAACAGATTGTCTATTACACCGCTGACAGAGCTAAGGACTCCCGAGTTTAAGGTACCAGGATACAGCCACTGCACAGGACTGTAGAGTCAGGACCAGCAGTCTCAGTACAGGTTAGGCCAGTCTCCCTGCTCCAAGCTCACTGTACTTCCCACATGGGTGAAAGAAGGATAAGGGAGATGGGGTAGGAATTCCTGGATGGTCCAGGCCATAGTGTACAAGGAATTAGCTGCTCTTCCTTCTGTGTCACATGGGCAAGTTTCTAGCCTTTCTGTGCTCCCTCATTATACAAGGGTGATAATGCTATTAGAAGTGCGGTTACCTCTCTGAACTTTGGACCGGGGCCTAGCCCCTGGGTAGTCAGTGTTCATCAGTGTCAGCTGTGATCATCCCTGCTGTCTTTTCCTTCTGCAG
Seq C2 exon
ATGGATGATGAGGACACACTGTTACCTAGGAAGTTACAGGCTGCTCTGGAGCAGGCTCTGGAGAGGAAGAACGAGCTGATCTCCCAGGATTCTGACAGTGACTCTGATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013934:ENSRNOT00000064902:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.211
Domain overlap (PFAM):
C1:
PF0214116=DENN=PD(4.3=57.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]