MmuINT0153203 @ mm9
Intron Retention
Gene
ENSMUSG00000031024 | St5
Description
suppression of tumorigenicity 5 [Source:MGI Symbol;Acc:MGI:108517]
Coordinates
chr7:116669740-116670899:-
Coord C1 exon
chr7:116670858-116670899
Coord A exon
chr7:116669852-116670857
Coord C2 exon
chr7:116669740-116669851
Length
1006 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CCTGCTGTCTCCTCCTGCAGATG
3' ss Score
13.25
Exon sequences
Seq C1 exon
GCACTGATGGTGAATCTGGGATCTGACCGATTCATCCGACAG
Seq A exon
GTAAGAGCCGCATATTACAGAACCTGAATCTGCCTAGGGAAGGCAGTGGGCACTCAGTAACCACCCGGCCTGCTTTCTGATTTTTGAATTTCAAACTCACAGAATAGACGGGTGGAGCAAGCTGATTTCAGAACCCTTGGCCTCAGTGGGATCTGCCTTTCTAGCCTTTGTTGTTGGTTTTTCTTGGATCTAGGGTCTCACTATCCAGCTCTGGCTGACCTGGAACCTGTGATGGTTCTCTTGGGTGCTGGGATTATAGATGTGTATCACCACACCCAGCTTTTCTGGGTAGCAGTGTGAAAGAATAAGACCTGAAAGTTTTAATACTCACTTTTGGGCTCTGTCCGGGTGATACGTGTGTGTTTGTTTGTTTGTTTTGTTTTTGTTTGTTTTCTTTTGAGATAGAGCCTTGATGTGTTTGAGCATATAACCTAAAAACAGAAAATGGACCTGAAATTTTCTCTGAGCCAGTGCTCCCATCAGATAACACCTCTCTAGAGATATTCTGGGGATTATGAACACTACTGAATGTGCTTCATATAAAGGCTCACAGTCATTGCTGCAAAAAGCCCTCGCTAGTCATGGAGTCTTCTCGGCTTCCCATAGAGCATGACCTAGCAGGTCCCCTTTGGGAACAGACAGCCTATTACAAACCACTGCTATAACTAAGGACTCCCCAGGTTAAAGCACCAGGATACAGCCCCGGCACCAGAGTATGGATCGGGAATAGCATTCTCAGTACAGGTTAGGCCAGTCTCTGCGCCAAGTTCACTGCACTTCCTACCTGAGTGAAAGTAGGACGAGAAGGGAGATGGGGTAGGAGATCCTGCATGGGTCCAAAGAATCAGCTGCTCTTTAATCTGTAACTTGGGCAAGTTTCAAACCTTCCTGTGCTCGCTCATTATGCGAGGGTGCTAATAGTGTCAGTGCTGTTAGAAGCTCTGTGAGCTGGGGCCTGGCACGCGTCAGTGTCAGCTGTGGTCACCCCTGCTGTCTCCTCCTGCAG
Seq C2 exon
ATGGACGACGAGGACACACTGTTACCTAGAAAGTTGCAAGCTGCTCTGGAGCAGGCTCTGGAGAGGAAGAGTGAGCTCATCTCCCAGGACTCTGACAGTGACTCTGATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031024-St5:NM_029811:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.158
Domain overlap (PFAM):
C1:
PF0214116=DENN=PD(4.3=57.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: