BtaINT0141651 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005356 | ST5
Description
Bos taurus suppression of tumorigenicity 5 (ST5), mRNA. [Source:RefSeq mRNA;Acc:NM_001098093]
Coordinates
chr15:44454846-44456549:+
Coord C1 exon
chr15:44454846-44454887
Coord A exon
chr15:44454888-44456437
Coord C2 exon
chr15:44456438-44456549
Length
1550 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GTGGTCCCCTTCTCCCGCAGATG
3' ss Score
12.47
Exon sequences
Seq C1 exon
GCACTGATGGTGAATCTGGGGTCTGACCGATTCATCCGACAG
Seq A exon
GTAAGAGTGGGACATTGCATGGCCTGCCCCAGGGTGGGCGCTTGTTTGATACAGAGCACCTAGCACTGTTGCACACACATACTCCACCCTCGTAGCTGACTGCTGAGCTCTGGGTTCCACGTTCACAGAGCAGACAGTTGAAAAGTGGCTGGAGGACTATCCATGATGCAAAGAATGTGGAGGAATGTAAAGGTTTGTGATTGTTGTCAACTTCAAAGAGTCTCTGTGAGTGGTAGAAATTCTGCTGGGCACATAAAGGAACATAATCTTAATGCCGTAGACTTTGGGAATGTAGTCTGTTACACGCACCACTGACAGAGCTCTATCTCCTGGGTACCAAGCATCAAGATATGCACACTGAATCAGAATATAGAGACAGGCACGGCAGCCTAACCTTGCGCCTGAGACGTGGGATTTCCCCGTCCCCCCCGCCCTGCCCCCCGCCAACCGTGCTTCCCACCTGGTGCCAGAGATGGAGGAACTGGGGAGACTTCATTGTGGTGCTGGGGTGGGAACCCCTACTGGTCCTGAGCAGTGAATGCCACCTGCTCCACACTTTTTATCTTTGTGACCCTGGGCAAGTTTCTTAACCTCTCTCTATGCCTTAGTTTCTCTTCTTAAAATGAAGTTGATAGGGACTTTTCCTCTTGCTCCAGTGTTAAGACCTCACCTTCCAAGGCAGGGGGTGTGGGTTTGATGCCTGGTGGTGAAGCTAAGATCTCACCTGCCTTGTGGCCAAGAAGCCAAACATAAAATAGAAGCGATATTGTAACATGACTTTCCAGGTGGTGCTTGTGGTAAAGAACCCACCTGCCAGTGCAGGAGACGTAAGAGATGCAGGTTCAGTCCTGGGTCAGAAAGATCCCCTGGAGGAGGGCACGGCGATCAGTATTCTTGCCTGGGGAATCCCATGGACAGAGCAGCCTGGTGGGCTGTAGTCCATAAGGTCACATAGAGTCGGACAAGACTGAAGTGAGGGCTTCCCTCATCGTCCAGTGGTTAAGAATCTGCCTGCTAATGCAGGGGACATGCGTTTGATCTCTGGGTCTGGAAGATCCCACATGCTTTGAGGCAGCTATGCCTGTCTGCCACAACTACTGAGCCCTTGCTCTAGCGTGTGAGAGATGCAACTCTTGAGCCTATGTGCCACAACTGTGGAAGCTCAAGTGCCCTAGAGCCGGTGCTCTGCAACCAGAGAAGCGCCACCACACAAGAAGCCCACGCGCCGCAAGTAGAGAGTGGCCCCTACCCTCAACGAGACAGAGCCCTCCACAGCCCCAAAGACCCAGCACAGCCAATAATAAATAAAATTTAAAAATAAAAGACTAAAGCAACTGAGCTCGCACACAGTATTGTAGCAGATTCAATGAAGACTTTACAAATGGTCCACATAAAAAAAAAATCTTTAAAAAAATGAGGTTGGTAAAATTATCAGGGTTATTGGGAGGATGAAATGAGATTATATTATATAATCGAGCTTATATATTCAAGCTCTTCAGACAGCACGGGCACAAAGGAAGTGCTCACCGTGTGGTCCCCTTCTCCCGCAG
Seq C2 exon
ATGGATGATGAGGACACGTTGTTACCTAGGAAGTTACAGGCGGCTCTGGAGCAGGCTCTGGAGAGGAAGAACGAACTGATCTCCCAGGACTCAGACAGCGACTCCGATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005356:ENSBTAT00000007048:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.211
Domain overlap (PFAM):
C1:
PF0214116=DENN=PD(4.3=57.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development