HsaINT0159818 @ hg19
Intron Retention
Gene
ENSG00000166444 | ST5
Description
suppression of tumorigenicity 5 [Source:HGNC Symbol;Acc:11350]
Coordinates
chr11:8719072-8720521:-
Coord C1 exon
chr11:8720480-8720521
Coord A exon
chr11:8719184-8720479
Coord C2 exon
chr11:8719072-8719183
Length
1296 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GTGCTTTCTTTCTCCTGCAGATG
3' ss Score
13.36
Exon sequences
Seq C1 exon
GCGCTGATGGTGAATCTGGGATCTGACCGATTCATCCGACAG
Seq A exon
GTAAGAGGGTGGGTGCTTGCTAGAGTTGGGCTCCTGAGCACCCTGCACCATCACACACACTACTCAACCTTCACAACCTGTTTGTTGAGCTCTCTCTCTGGGTTCAGTACTACTCACAGACTAGTCAAGGGTGGGGAGAAGCTGGTCTTGGAATCCTTGACCTTAGCAGGGTCCGCCTTTCCAGTGACATCATGAGCTTCTAGAAGGCAGTGTGGGAATTTGAAGAACACGGCCTGGGAGTCCACAGACTTGGCCACTGGACTTTGCCCCCTTTGAGCCACATGGTCTTAGGCCTCTAAATTCTTCTGAGCTCTAAAGGAGAGGTGGTGACAACACCTGCCTTGAAATGTTTGCTGGGGGTTACACAAATAACTATAGATTGTTATGTAACGTACAGGTTTGCAATCATTGTTGTCAACTACAAAAAGCCTTTGTTAGTCGTGGAAATCCTCCTGGCTCTCTACAAAGGAGCACAACCCAGTGCTCTCCCCTATGGAAATGTACTTATTGTCTGTTACACACCAATGACGGAGCTGAGGACTCCCTGGGTACCAGGCATAGTGATGTGGACACAGAAACAGAGTATAGAGACGAAACAACAGTCTAACTTCATTCCTGAGACACAGGCTGGCCACAGTCCCCCTGCCCCAAGCCAACTGTGCCTCCTGCCTGGAGCTGAAGATGGAGGAATTGGGGAGACCTAATCAGGAACCCCTGGCTGGTCCTGGTCACAGAGGCCAGTGAATGCCACACTGGCTCTACCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGACAGGGTCTCACTGTCATCCAGGCTGGAGTGCAGTGGTACAGTCATGACACTGCAGCCTCGACCTGCCTGGGCTCAGGTGATCCTCCCCATGTCAGCCTCCTAAGTAGCTGGGAGTACAGGTGCATGCCACCATACTTGACTAATTGTTTTTTTGTGTGTGTTTTGCAGATAGAGGGACCTGCTAAGTTGCCCAGGCTGGTCTCGAACTCCCTCCTGGGCTCAAGCGATCCTCCCGCTCAGCCTTCCAAAGTGTTGGGATTACTGGCGTGAGCCACTGCGCCTGACCCTCTACCACTTTTAATCTCTGTAATCTTGGGCAAGTTTCTTAACCTTTCTGTGCTTCAGTTCCTCATCTTAAAATGAGGTTGATGATAGTTATGAGGGTTACTGGGAGAGATAAATGAGATTATCTACTCACGCTCTTCTAACAGGTCTTAGCACATAGTAAGTGCTCAGTGTCAGCTATGATTGTCACTGTGCTTTCTTTCTCCTGCAG
Seq C2 exon
ATGGACGACGAAGACACGTTGTTACCTAGGAAGTTACAGGCAGCTCTGGAGCAGGCTCTGGAGAGGAAGAATGAGCTGATCTCCCAGGACTCTGACAGCGACTCCGACGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166444-ST5:NM_213618:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.211
Domain overlap (PFAM):
C1:
PF0214116=DENN=PD(4.3=57.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)