DreINT0156553 @ danRer10
Intron Retention
Gene
ENSDARG00000037363 | st5
Description
suppression of tumorigenicity 5 [Source:ZFIN;Acc:ZDB-GENE-030131-2547]
Coordinates
chr7:28199169-28199493:-
Coord C1 exon
chr7:28199452-28199493
Coord A exon
chr7:28199281-28199451
Coord C2 exon
chr7:28199169-28199280
Length
171 bp
Sequences
Splice sites
5' ss Seq
CAGGTTCGT
5' ss Score
7.97
3' ss Seq
GGTAATCTTCCTGTATACAGATG
3' ss Score
5.46
Exon sequences
Seq C1 exon
GCTTTAATGGTTGATCTTGGGACGGATCGCTTCATCAGACAG
Seq A exon
GTTCGTTCATAAACTAATCTCTCCCTCCTGAGTTTGACACAAACTCTTTCTCCCATGGCTGTAACACAGCTAATTGCGTGTTGTCGTTAAGATGTGAGAATATAAACAAGCGGGATGTGCCATGGCATGAATCACTAAACATTGTTACAATGGTAATCTTCCTGTATACAG
Seq C2 exon
ATGGATGACGAGGCCTCGCTGCTTCCACGCAAACTGCAAGCTGCTCTGGAGCAATCTCTCGAACAGAGGAACGACATCATCAATCAAGACTCCGACAGTGAATCGGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037363:ENSDART00000133050:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.289
Domain overlap (PFAM):
C1:
PF0214116=DENN=PD(4.3=57.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTAATGGTTGATCTTGGGACG
R:
CGATTCACTGTCGGAGTCTTGA
Band lengths:
147-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]