RnoINT0046506 @ rn6
Intron Retention
Gene
ENSRNOG00000017680 | Dennd2d
Description
DENN domain containing 2D [Source:RGD Symbol;Acc:1305120]
Coordinates
chr2:209114763-209115223:+
Coord C1 exon
chr2:209114763-209114804
Coord A exon
chr2:209114805-209115138
Coord C2 exon
chr2:209115139-209115223
Length
334 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
CTAGCTCTGTTCTATCCTAGGTT
3' ss Score
8.2
Exon sequences
Seq C1 exon
GTCCTGTTGGTGAATCTTTGTAAAGGAACCTTCTTATTATCA
Seq A exon
GTAAGTCTGCATTCAGTGCATCTGCTGGCCGACCACCAACACAGCCTTTTAATATCATGATGTCTCACTGATCTCAACAGACACTTTGAGAAAGACTTGTGCTGCCTTCCCCTTATGAGGAGGCCTCAGGGACAGTGTCTTTTGAGCAAGTAATATACATTGATGGGGACCCCTTACTCAGGATTTGGGTTAAAACTGGAGGCAAAGGAATGGCTTCTTTCCTCTGTGGAGCAGTGCTTTGGGCATGGCCTTGTATACTTCCCACATTCTTCTACTCCTCTTCCTGACCTCATGACCATCTGCTTGACTTTGATCTAGCTCTGTTCTATCCTAG
Seq C2 exon
GTTGGTGATGAGAAAGACATCCTACCACGGAAACTTCAGGATGACATCTTGGACTCTCTTGCTCAAGGAATAAATGAGTTAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017680:ENSRNOT00000023807:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=PD(4.3=57.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]