MmuINT0048306 @ mm9
Intron Retention
Gene
ENSMUSG00000027901 | Dennd2d
Description
DENN/MADD domain containing 2D [Source:MGI Symbol;Acc:MGI:2181193]
Coordinates
chr3:106301736-106302223:+
Coord C1 exon
chr3:106301736-106301777
Coord A exon
chr3:106301778-106302138
Coord C2 exon
chr3:106302139-106302223
Length
361 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
3' ss Seq
GTAGCTCTATTCTCTCCTAGGTT
3' ss Score
7.03
Exon sequences
Seq C1 exon
GTCCTGTTAGTGAATCTTTGTGAAGGAACCTTCTTATTGTCG
Seq A exon
GTAAGTGTCTGCACTCAGGGGCACCTGCAGGCCTACCATCAACACAGCCTTTTAAGTCACTTGATGTCTCACTGATCTCAACAGACACTTTGAGAAAGTCTTGTGCTGTCTTCCCCTCATGAGGCCTCAGCAAAGATCCAGAGGCCTCTATCCTCTATGAGGCAATCAGGGACAGTGTCTTTTGAGCAAGTAATATACACTGATAGTGACCTCTTGCTCATGCTTGGGTTGAAACTGGGGGCAAAGAACTGGCTTCTGTTCTTCTCCGAGGAGCAGTCATTTCATCCTCACATTCTCCTCCTCCTCTTCCTGTCCTCATGAGCAGACGGCTTGACATTAATGTAGCTCTATTCTCTCCTAG
Seq C2 exon
GTTGGTGATGAGAAAGATATTCTACCACCAAAACTTCAGGATGACATCTTGGACTCTCTTGGTCAAGGGATAAATGAGTTAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027901-Dennd2d:NM_028110:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=PD(4.3=57.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: