HsaINT0047323 @ hg19
Intron Retention
Gene
ENSG00000157680 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:2855]
Coordinates
chr7:137282593-137284651:-
Coord C1 exon
chr7:137284569-137284651
Coord A exon
chr7:137282654-137284568
Coord C2 exon
chr7:137282593-137282653
Length
1915 bp
Sequences
Splice sites
5' ss Seq
TGCGTAAGT
5' ss Score
9.73
3' ss Seq
TTCTTCTATTTCCTCTACAGGCT
3' ss Score
10.6
Exon sequences
Seq C1 exon
GGAACCAAAGTCCTGCAGATGTTCATGTGGTACCTGAATCCACGGCAAGTCTTTGATCTTTCTCAGGAAGGGCCAAAAGATGC
Seq A exon
GTAAGTCTGGAAATATTCTCCATGGTCCATATGTATTTTAGGCAAGTGAGAATTTTCTGCTTCATTATCTGATTACCTTGTGAGGTATATCCTGACCATCTGTCATCTACCTTCTCACCTGTACTCTCCTTCCTTTAAAACTTCATCCAAAGTTCTCTCCTACTCTTTATTGGCTTAGTTCCCTTCGAAACATATCTTCTCAGCTATTAACTCAGGATACGTCTAGTGTGTTTGTTACTTACGTATGTGTAACTGTAGGTTATTCTCTGCAAATCTGTGAATTGAGAAAGGACTCATTGTTTTTCTATTTCTTCATGTACAACTTTGGAGATGCACATTAATGGAATGTAAATGTATGTCTGTGGAGGGTGGAGCCATGTTTGTTTATGAATATTTGAACTGAAAAGAGAGAGTGTGTGTGTGTGTGTGCGCGCGCTTGTGTGTGAGAGAGAGAGAATCAATTGATTATACCTGAGGACTCTGCACAAATGTGGGGAAGACATATTAATTCCTGCTCAATCCCGTTTCTGAGCTTCTCAGAAATCTCATTCTCTGCTTTTGTTAGAAGTGTTTAAAATAAAGTCTAGATTGTAGGTGACCCATATCCTGCTTCTCTCCTTTGGTGGAGAGGCACACAGTGGAAAAGACCAAGGACACTTCTGCTGTTCTCTGGTTCTCCGTTTTAAATTCATGTACTAGGATAGTTCAGATGTTATCTGATAAATGTTAGAACACAAGGGTACCACTTATTTTTTAATAAGTAACAATATCAGAGGAAAAGGTGATTTCTAGAGAAATAGTATTCTTGTATAAAATGGATAAATTACTTATTTTAAGCATGCAGATTAGGAAATATGAAAATTAATTTGTTATTTTCTTAACGTATGAATTTCTTCACCAGTTGAGTTTGCTGCAAGATTCTTCCTCTCTCTGTCCCATAATACATATATATATATTTATTTATTTTTATTTTCTGTACTTGATTATGCTAAGGCAAATCTGCTATCCTGGGATGTGCCATTTTAGGAGCTTATTTTTCTTAAGATTTTATCACTTTAGTTAGACCCTAGAGAGACACTTCAGAGGTCACCGTAAAGAACATGGTAGGACAGGAAATATTTTCAGAAAAAAACCATATTTTGTGATTTAAATAGGTGATATTTTCTAGATTACAGCCTCTAGCAACTTCACCTAAGCAAAAGATTTAGCAGGGGCAGTGTCAATGCATTTTCCTGAGATCCAAGAGGAAAGACAAAATTATCTTATTTCAAGCAGAGAAGTTTGAAATAAATAAAAATCAGTCAATCTTCCCACTTTGGGTTGGAGGTGTAAGTGGTGTGTAACTGAGCTGAGAGAAAGACTAGATGGAATTGTAGATGTGATACCTGTGTTCACATCTGAGAGTGCGGAAGCCTCCCCGTCTCGCTGAAAAAGATTTCTTAGGATTAAGAGTAGAAAGTATAAGTTAGAAGAAGTAAATACATCCAGGGAAAACTAATAAATATAAAGAGGGGATATATAAGGACTACTGATTATCAATTAATGATGATTTTCTTGGGGAAAGGGGAAGAGGAAATGATGGGAAAAGAAAAAGAAGGAAGTCAAAACTAACGAGGAAAATAATGTTGACATATAATAGAAGTTATGGGAAATAAAACTAGGACATCCTAAAATCCCTTAAATTCCAACGTTGAATTATTCATTCAAAAATAATGTCTGATGCCTACACCTGTTCCACTGGTGGGAGTCATTCTTCCTGTGGTTACTTGGGACCTATGATAGCATTGTCATCCTCATGATTACACATTTTCTCCAGCGGACACCACCCCTACCTACCCATGTTGTCCTCTGCTTTCTCTCTGCTCTAGCCAGTGAAATGTTCTTTTGTTTACTTTTTCTTCTATTTCCTCTACAG
Seq C2 exon
GCTTGAATTGTATAGGAAAGTACCAAATCTGCGAATTCTGGCCTGTGGTGGGGATGGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157680-DGKI:NM_004717:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=FE(21.6=100)
A:
NA
C2:
PF0078119=DAGK_cat=FE(16.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)