RnoINT0047012 @ rn6
Intron Retention
Gene
ENSRNOG00000026705 | Dgki
Description
diacylglycerol kinase, iota [Source:RGD Symbol;Acc:735049]
Coordinates
chr4:64577854-64579710:-
Coord C1 exon
chr4:64579628-64579710
Coord A exon
chr4:64577915-64579627
Coord C2 exon
chr4:64577854-64577914
Length
1713 bp
Sequences
Splice sites
5' ss Seq
TGCGTAAGT
5' ss Score
9.73
3' ss Seq
GTCTTCCATTTCCTTTCCAGGCT
3' ss Score
10.51
Exon sequences
Seq C1 exon
GGAACCAAAGTCCTACAGATGTTTATGTGGTACCTGAATCCACGGCAAGTCTTTGACCTTTCTCAGGAAGGGCCAAAAGATGC
Seq A exon
GTAAGTCAGGAGACACCCTCCATGACACGGCTGTAAAGTGGACCCTTGGAGTTGGGGTTGAGGCTGTTTATTATCCGGTGGTCTGGTGAAGTCTTTTGTTAACTTTCTTACCTGCAGTTTGCTCTTAAACCTGAAGCCCCCCACATGCTGGCTTTGCATTTGTTTCCACCAAATTGCTGTCTGATCAACTGTTGGGTCAGGGCCTGCTGCTGTGTGCTTGCTGCCAGTGTATGCAGGACTGAAGCTTAATCTTAGAAAGCCAGGGAGTGAGAAGGAACTCGCTTTTCTGTTTAGGTTTGTCTGATTTTGAAGACACACTTAAACAGAAATGTGAGTTTATAGCTCAAAGGGTCAACATATGTATGAATAAACTTTCATTCTGGAGAGATTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGAATGCATCCAGAATGTGTATTCTGGGGGTAGGGGAGAAAGGAAAAGAAAGAAGAGAGAGAGGAAAAGAGGAAAAATGGAGCCGGACAGGGGAGGGGAGGGGGAGGGAGGGAGGGGGAGGGAGGAGGCGAGGGAGGGAGGAGGGAGGGAGGGGTATTGAGGTGAACTAATTGTAGCTTTGCATGCTGCAGTTCAGTGAGACAGGCATTTCAGTTTCTGTTCTACCTCCGTTCTGAATTTATGTGTCTAGTTAGAGGTGTTGAAAATGAAGTCTAGATGTACAGGACCCAACATAGCAGCAAAGAACGGGGCATTTCATGAGGATCAGAGCAAGGCAAGGAATATTTTCAGGAAAACATACACCATTTATTACATGTAAGTAGATGGTTTTTTCTGGAGCAGAGCTACCAGTGCCTGCTTTCAGCAAGGCAGAATGACTTTGTTCTCTTGAAGCCAATCAGAAAGATGAGATGATCTGACCCCTTCAAACAGGCACATTCAAAGTAACGAGAAACCGGTGGGTTTCTTCCCCGACCCCAGGCTGTGGGTAGAGGAGAGACTGTGCGTGAGCAAGCTAAGGTAGACGCGTGCTCACGGTAGTAATGGCAGTGATGAGTCTTCTCCATCTTTATCAGCTTTCAATTATTCAAGGATTAAGAGTGGGAAGTAGAGACTTGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCCGAGTCCAATTCCCAGCAACCACATGATGGCTCACAATCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGAGAGCAACAGTGTACTTATATACATAAAATAAATAAATAAATCTTTTTTTAAAAAAGGAATGGGAAGTGTAGATTTGAAAAGTAAATAGACTCAGGGGAAGCTAATCAAAATTAAATAAGGAGGAAACATAGGGATTACTGATTATCAATTAATCAAATTTTACCCCCTTTGATAAAGGAGAAAGGAGAGTGACAGAAATGGACAATAAGAAAGGAAGTAAAATCCTAAAGAGAACAATAATGTGTATCGAGAGGATGGAGAGTTATGGGAATTCTCCCTCCCAGTGTTCACAGAGCACCGGAGACCTCTGGTTTCTGGTTCAGTGGCAGGAGTCAGTTTGCCTTGGCTCTGTGGGCAGTGGAGGAGCACACGTGCTCTCTATGGGCAGTGCCCTTTCATTTTGCCCCCTAGTCCCTCTCTATAGAGAACAAGGTCTTACCTTGTCTTCCATTTCCTTTCCAG
Seq C2 exon
GCTGGAGCTGTACAGGAAGGTACCAAATCTGCGAATTCTGGCCTGCGGTGGGGATGGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026705:ENSRNOT00000033268:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=FE(21.6=100)
A:
NA
C2:
PF0078119=DAGK_cat=FE(16.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]