MmuINT0048823 @ mm9
Intron Retention
Gene
ENSMUSG00000038665 | Dgki
Description
diacylglycerol kinase, iota [Source:MGI Symbol;Acc:MGI:2443430]
Coordinates
chr6:36998120-37000252:-
Coord C1 exon
chr6:37000170-37000252
Coord A exon
chr6:36998181-37000169
Coord C2 exon
chr6:36998120-36998180
Length
1989 bp
Sequences
Splice sites
5' ss Seq
TGCGTAAGT
5' ss Score
9.73
3' ss Seq
GTCTTCCATTCCCTTTCCAGGCT
3' ss Score
11.04
Exon sequences
Seq C1 exon
GGAACCAAAGTCCTACAGATGTTTATGTGGTACCTGAATCCACGGCAAGTCTTTGATCTTTCTCAGGAAGGGCCAAAAGATGC
Seq A exon
GTAAGTCTGGAAACATCCTCCGTAATATGGCCATAATATGGACCATTGGAATTGGGGTCAAGGCTATTTATTATCTGATGTCTTGGTGAAGTCTTTTCTGTTTGTCTTTCATTGACTTTCTTACCTGCATTTTGCTCTTCTTGAAACCTCCTGATGCACCCCCCCATGCTGTCTTTGCATTTGTTTCCACCAAATTGTTGGATCAGTGCCTGCTGTATGCAGGACTGAAGCGCATTCTCAGAAAGCCAGGGAATGAGAAAGGACTTCTTGCTTGTCTGGTCTGGTTATGCGTGTCTGATTTTGGAGACATGCTTAAACAGAAATGTGAGTTTATAACCCAAAGGGTCATGAAATGTTTGCATAAACTTTCATTCTGGAGAGACCATGTGTGTATGAATGCATCCAGAATGTGTATCTGGGGATATGGGAGAAAGGAGAAGAAAGAAGAGAGAGAGGGAAAGATGGAGGGAGAGAGAGAGGAAGGGAGGGAATCAGAAGGGAGGGAGAGGGGGTGGAGATATGGAGATGAACTAATCATAGCTTCGGATGCTGCAGTTCAGTGAGGCAGGCATTTCAATTTCTGTTCTGTCCCCTTTCTGGATTTCTGTGTTTAGTTGGAAGTGTTGAAAATAAAGTCTAGATGTACATGACCCAGTGTAATAACAAAGAACGGGGCATTTCTCTTCCTGTGTGATTCACGGTCTTAAATCCATTGCATTACTGAGTTAGTTCAGATGACATTTGAGTTAGCAGGTTTTTTAATAAGTATTGATGTCAGTGTGAAAGAGATGTCAATATGGAGCAGTTCGTGGTGGCGCACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAAGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAACCAAAAAAACAAACAAACAAACAAACAAAAAGAGATGTTAATATGGATGGTTTCTAGGGAATGGTATTCCTGTATAAAATGAGTAAATTAGATATTTTAAACATGTAAGGAAATAATGACTATAAACCAAATTTCTAATGTTTCCTTCTCCGAATTTCTTCACCACCAAGGTCTGCTATGAGACTTCTTTATTTTAATGTTTCTTTATGTGCCTCATTGGCTTGTGGTCTTTGGATTTGATATTTATTAATATTTTTCAATCTCTTAAGTTAGACTTTACATAGAGGGTTCATTAGGATCATAGCAAGGCGAGAAGTATTTTCAGGAAAACCTACACCATTTATTACGTGTAAGTAGATGGTGGGTTTCTGGAGCTGAGCTACCAAGGCCAGCCCTCAGCAGGAAGCTTTGCAAGGCAGAATGGCTGTGTTCTCTGGAAACCGAGCAGAAAGATGAAATGATCTGACCCCCAAACAGGCACATTCAAAGTAAAAAGACGCCAGTGGGTTTCCCCCACCTCAGCCTGAGGGTAGAGGAAAGACTGAGCAGGCAAGCTAAGGTAGACTCACGCTCACTGTAGTAATGGCCGTGGCCAGTCTTCTCTGTCTTTCTCAGCTTTCAGTTTTTCAAGGGTTGAGAGTGAGAAGTATAGATTTGAAAGGTAAACAGACTCAGGGAAAGCTAATCAAAATGAAATAAGGAGGAAACATAAAGATTACTGATTATCATCAGCCCCTTCCCCAACCCCGCCCCTGAAAAAGGAGCGAGTGACAGAAAATGGAAAAGAAGAAAGGAAGTAACCTAGACAACAATATAATGTGGGTTGAGAGGATGGGGAATTATGGGAATTCTCCCATCCTGTGTTGGTCATGGACCACCTGAGACCGAGACATGTGGTTTCTGACTCAGTGGCAGGAGTCAGTTTGCCTTGGCTCTGTGGGCAGTGAAGGATCAGGAATGTTCTCTGTGGGGAGTCCCCGTGCATTTGTCCCGAAGTTCCTCTCTACAGAGAACCGTGTGCTTACCTTGTCTTCCATTCCCTTTCCAG
Seq C2 exon
GCTGGAGATGTACAGGAAGGTACCAAATCTGAGAATTCTGGCCTGCGGTGGGGATGGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038665-Dgki:NM_001081206:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=FE(21.6=100)
A:
NA
C2:
PF0078119=DAGK_cat=FE(16.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: