HsaINT0047411 @ hg19
Intron Retention
Gene
ENSG00000149091 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:2857]
Coordinates
chr11:46395707-46396004:+
Coord C1 exon
chr11:46395707-46395785
Coord A exon
chr11:46395786-46395948
Coord C2 exon
chr11:46395949-46396004
Length
163 bp
Sequences
Splice sites
5' ss Seq
GAGGTTGGC
5' ss Score
3.55
3' ss Seq
CACTGCTTGTCTCCACCCAGAGG
3' ss Score
6.91
Exon sequences
Seq C1 exon
TTGCCCCTGGATGTCTTCAACAACTACTTCAGCCTGGGCTTTGACGCCCACGTCACCCTGGAGTTCCACGAGTCTCGAG
Seq A exon
GTTGGCAGCCTCCCACTGAGGCCAGGGCAGGGTGGGCACAGGAGTGTCCCCGGGAGGGTCAGACCCTGCTCCCGCCAGTGAAGGCATCCATCCCAGCCCTCCCCCAACCCCACCTGGGCAGGCTGGGGTGACTCACTGGCCCCCACTGCTTGTCTCCACCCAG
Seq C2 exon
AGGCCAACCCAGAGAAATTCAACAGCCGCTTTCGGAATAAGATGTTCTACGCCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149091-DGKZ:NM_003646:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.050
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=PU(13.9=81.5)
A:
NA
C2:
PF0060914=DAGK_acc=FE(11.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCTGGATGTCTTCAACAA
R:
CCCGGCGTAGAACATCTTATTCC
Band lengths:
133-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)