BtaINT0048710 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013636 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr15:77243071-77243406:+
Coord C1 exon
chr15:77243071-77243149
Coord A exon
chr15:77243150-77243350
Coord C2 exon
chr15:77243351-77243406
Length
201 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
3' ss Seq
TATTTCTTGTCACCACCCAGAGG
3' ss Score
5.23
Exon sequences
Seq C1 exon
CTGCCTCTGGATGTCTTCAACAACTACTTCAGCCTGGGCTTTGACGCCCACGTCACCCTGGAGTTCCACGAGTCTCGAG
Seq A exon
GTGGGCGCGTCTTTGCTGAGGAGGCCACCCGCGGGTGGTGGTGGGCGGGGGGGAGCCCAGGAGGGGCCCCGAGATGGCCAGACCTTGCCCCTGCCAGTACAAGGCTTTCGTCCATCATCAGCCATCCCGCCCAAGCCCAGATTGGAAAGCCCCAACAGGCTCAGAGCAGCTGACTGTCCCCTATTTCTTGTCACCACCCAG
Seq C2 exon
AGGCCAACCCGGAGAAGTTCAACAGCCGCTTCCGGAATAAGATGTTCTACGCCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013636:ENSBTAT00000018128:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=NA C2=0.105
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=PU(31.4=81.5)
A:
NA
C2:
PF0060914=DAGK_acc=FE(25.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTCTGGATGTCTTCAACA
R:
CCCGGCGTAGAACATCTTATTCC
Band lengths:
134-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development