RnoINT0047097 @ rn6
Intron Retention
Gene
ENSRNOG00000017737 | Dgkz
Description
diacylglycerol kinase zeta [Source:RGD Symbol;Acc:70929]
Coordinates
chr3:80849682-80849967:-
Coord C1 exon
chr3:80849889-80849967
Coord A exon
chr3:80849738-80849888
Coord C2 exon
chr3:80849682-80849737
Length
151 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGC
5' ss Score
3.77
3' ss Seq
CACCCCTTGTCTCTCCCCAGAAG
3' ss Score
10.46
Exon sequences
Seq C1 exon
CTGCCCCTGGATGTCTTCAACAACTACTTCAGTCTGGGCTTTGATGCCCACGTCACCCTGGAGTTTCATGAGTCTCGAG
Seq A exon
GTTAGCATTCTCCTGCAGAAGGGGCCTTGGGAGGCCAGGGCAGGCATGGAAGGTTCAGGAGTGTCAGACTTGGCTCCCTTAGTCTCCTCCCAACCCCAACCTGGGCAGCACCAGCAGTTGATTGACTTTATCACCCCTTGTCTCTCCCCAG
Seq C2 exon
AAGCCAACCCAGAGAAGTTCAACAGCCGCTTTCGGAATAAGATGTTCTATGCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017737:ENSRNOT00000024280:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.053
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=PU(13.9=81.5)
A:
NA
C2:
PF0060914=DAGK_acc=FE(11.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCCTGGATGTCTTCAAC
R:
CCCAGCATAGAACATCTTATTCCGA
Band lengths:
135-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]