DreINT0056540 @ danRer10
Intron Retention
Gene
ENSDARG00000014439 | dgkza
Description
diacylglycerol kinase, zeta a [Source:ZFIN;Acc:ZDB-GENE-111104-3]
Coordinates
chr7:38821180-38821461:+
Coord C1 exon
chr7:38821180-38821258
Coord A exon
chr7:38821259-38821405
Coord C2 exon
chr7:38821406-38821461
Length
147 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
3' ss Seq
TTTGTCTTCTTTCTCCTCAGAGG
3' ss Score
11.39
Exon sequences
Seq C1 exon
CTCCCTCTAGACGTCTTCAATAACTACTTCAGCCTTGGATTTGATGCTCATGTGACTTTAGAGTTCCACGAATCTCGAG
Seq A exon
GTTTGTGAAAACGCACTAGTCTGTCTGATAAATGTGCGACTGCTTGTTAACTAGATTGAGAAAGTAAAGGATGTAAAGTTTCTTCTGTGAGGTCCGATTGATTGGTGCTAATTGAGATTCATTATGGTTTGTCTTCTTTCTCCTCAG
Seq C2 exon
AGGCTAATCCTGAGAAATTTAACAGCCGGTTCAGAAACAAAATGTTCTATGCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014439:ENSDART00000093009:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=PU(13.9=81.5)
A:
NA
C2:
PF0060914=DAGK_acc=FE(11.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTCTAGACGTCTTCAATAACT
R:
CCCTGCATAGAACATTTTGTTTCTGA
Band lengths:
134-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]