MmuINT0048911 @ mm10
Intron Retention
Gene
ENSMUSG00000040479 | Dgkz
Description
diacylglycerol kinase zeta [Source:MGI Symbol;Acc:MGI:1278339]
Coordinates
chr2:91938509-91938795:-
Coord C1 exon
chr2:91938717-91938795
Coord A exon
chr2:91938565-91938716
Coord C2 exon
chr2:91938509-91938564
Length
152 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGC
5' ss Score
3.77
3' ss Seq
CACCCCTGATCTCTACCCAGAAG
3' ss Score
5.77
Exon sequences
Seq C1 exon
CTGCCCCTGGATGTCTTTAACAACTACTTCAGCCTGGGCTTCGATGCCCACGTCACCCTGGAATTTCATGAGTCTCGAG
Seq A exon
GTTAGCACCCTCCTGCTGAAGGGGCTGTGGGAGGCCAGGGTAGGCGTGGGAGGTTCAGGAGTGTCGGCCTTTGCTCCCTTAGTCTCCCCACGACCCCAGCCTGGGATGCACCAGCAGGCTGACTGACTTTACCACCCCTGATCTCTACCCAG
Seq C2 exon
AAGCCAACCCAGAGAAGTTCAACAGCCGCTTTCGGAATAAGATGTTCTATGCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040479:ENSMUST00000099709:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.053
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=PU(13.9=81.5)
A:
NA
C2:
PF0060914=DAGK_acc=FE(11.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCCTGGATGTCTTTAACA
R:
CCCAGCATAGAACATCTTATTCCGA
Band lengths:
134-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types