HsaINT0047416 @ hg19
Intron Retention
Gene
ENSG00000149091 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:2857]
Coordinates
chr11:46388841-46389297:+
Coord C1 exon
chr11:46388841-46388949
Coord A exon
chr11:46388950-46389201
Coord C2 exon
chr11:46389202-46389297
Length
252 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
3' ss Seq
CAAGCCCATCCCGTGGCTAGGAG
3' ss Score
3.9
Exon sequences
Seq C1 exon
GAAAGCCATCACCAAGTCGGGCCTCCAGCACCTGGCCCCCCCTCCGCCCACCCCTGGGGCCCCGTGCAGCGAGTCAGAGCGGCAGATCCGGAGTACAGTGGACTGGAGC
Seq A exon
GTGAGTGCCTGAACACCCCTGGGTCCCAGACCCTCTGGGCTCTTGGCCAAGGCGCAGCTGGCGGGTGGAGGCACTAAAGGCAGCTGGGAGAGCCAAGCCTGGAAGGGTTGGGACAGTGGGGCAGACGGAACAGAGCAGGGTCGATCGGGGCGCTGGAGTGGGTTTGTCTTGGGAGAGGGCGGGTGGGCGGGGGCTGATGGGAGGGAGGGCTGGGCGGCCAGCGTGTGCTGAGCAAGCCCATCCCGTGGCTAG
Seq C2 exon
GAGTCAGCGACATATGGGGAGCACATCTGGTTCGAGACCAACGTGTCCGGGGACTTCTGCTACGTTGGGGAGCAGTACTGTGTAGCCAGGATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149091-DGKZ:NM_003646:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.637 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138781=zf-C2H2_3=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGCCATCACCAAGTCGGG
R:
AGCATCCTGGCTACACAGTACT
Band lengths:
204-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)