GgaINT0054681 @ galGal3
Intron Retention
Gene
ENSGALG00000008380 | DGKZ
Description
NA
Coordinates
chr5:25825071-25825980:-
Coord C1 exon
chr5:25825872-25825980
Coord A exon
chr5:25825167-25825871
Coord C2 exon
chr5:25825071-25825166
Length
705 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
3' ss Seq
CGTTGTCTTGTGCCTTTCAGGAG
3' ss Score
10.29
Exon sequences
Seq C1 exon
GAAAGCTATTGCCAAGTCCAGCCTCCAGCACATGGTAGCCCAGCCAAACCCCGTGCCAGCCCTGAGGAGTGAGTCAGAGAGGCAGATACGCAGCACTGTGGACTGGAGC
Seq A exon
GTAAGTGGTGGTGCGCTTTGCTGGGTGTTGCATGGGACAGGCTCCTGGCCAAGAAGTAGCAGGATCTTCCCTTGCAGAGGCTTCCCAAGTGACTTCAGCTTTGACACTTCTGTGGCCTCCACTGTGCCACCAGCTGGTGCCACTGTCTGTGCTGCTGGCAGCACCCCTTCGTGCTGCGAGGAGAGGCATAGGCAGCTCCCTGGGAGGGTGGCACAGTTGCTTCTTCTCCAGTTCTGCTCCTGACAGTGGAGGTCTGCTGGTGGCTGGGGCTGAGTACCAGGACAAGCCCCTGCTCCTCCACAGGCAAGGACAGGCAGGCTGTAAGCTATGTCGTTAGGTCACACAGTGGAAACTGCTTTTCATGTGGTAAACTTTCCCCAGATTCTCCTCTCAGGTGTTGGAAGCAGCGCCTCTGTGCAGGACATTTTGCAGCTGGGCTGGAGATCTTTGCTATGGGATCTGAACAAGGGGAGAGTTGGTTTCCTGGGGCAGTCTTATTTCCAGCGGGTGGGCAGCAGCTCTGTGAGGTTTCCTCTGTGCATATGTTGGCCCTGGTTTCTCAGTGAATCTTGATGCCTTGCCAACACCCAGCTCCACTTCTTCTTTCCCATCTCATCCCATAACTTGTCCCTGGCACAAAGCAGTTTAGGGACGGGGTGATCATTTGAGGATGCTCAGAGGAGCACGTTGTCTTGTGCCTTTCAG
Seq C2 exon
GAGACTGCAGTCTATGGGGAGCACATCTGGTTTGAGACCAATGTCTCTGGGGATTTCTGCTACGTTGGGGAGCAGAACTGCATGGCCAAGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380:ENSGALT00000038374:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.392 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0013017=C1_1=PU(42.1=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTATTGCCAAGTCCAGCC
R:
AGCTTGGCCATGCAGTTCTG
Band lengths:
199-904
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]